The 2.0 version of rSNPBase

Variant report

Variant rs28661007
Chromosome Location chr1:171566387-171566388
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:171524400-171566400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:171554400-171568400 Weak transcription Psoas Muscle Psoas
3 chr1:171556800-171567600 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr1:171558800-171573200 Weak transcription Small Intestine intestine
5 chr1:171561200-171569800 Weak transcription Pancreas Pancrea
6 chr1:171561600-171570000 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr1:171561600-171572200 Weak transcription Aorta Aorta
8 chr1:171561800-171567000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr1:171561800-171567600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr1:171561800-171568000 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:171561800-171568000 Weak transcription K562 blood
12 chr1:171561800-171570200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr1:171561800-171570200 Weak transcription Lung lung
14 chr1:171561800-171570400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr1:171561800-171572200 Weak transcription iPS-15b Cell Line embryonic stem cell
16 chr1:171561800-171576600 Weak transcription Brain Substantia Nigra brain
17 chr1:171562000-171568000 Weak transcription Thymus Thymus
18 chr1:171562000-171568200 Weak transcription NHDF-Ad bronchial
19 chr1:171562000-171569000 Weak transcription H9 Cell Line embryonic stem cell
20 chr1:171562000-171572000 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr1:171562200-171571800 Weak transcription HUES48 Cell Line embryonic stem cell
22 chr1:171562200-171575600 Weak transcription HepG2 liver
23 chr1:171562800-171572000 Weak transcription HUES64 Cell Line embryonic stem cell
24 chr1:171562800-171572200 Weak transcription iPS-18 Cell Line embryonic stem cell
25 chr1:171563200-171572000 Weak transcription H1 Cell Line embryonic stem cell
26 chr1:171563600-171566400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr1:171563600-171566600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr1:171563800-171566400 Weak transcription iPS-20b Cell Line embryonic stem cell
29 chr1:171563800-171566600 Weak transcription Primary B cells from peripheral blood blood
30 chr1:171563800-171566800 Enhancers Liver Liver
31 chr1:171563800-171567000 Weak transcription Fetal Muscle Trunk muscle
32 chr1:171563800-171568400 Weak transcription Fetal Brain Female brain
33 chr1:171564000-171567000 Weak transcription Skeletal Muscle Female skeletal muscle
34 chr1:171564000-171567400 Weak transcription Fetal Muscle Leg muscle
35 chr1:171564000-171568000 Weak transcription Primary hematopoietic stem cells short term culture blood
36 chr1:171564000-171568000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr1:171564000-171572200 Weak transcription Fetal Kidney kidney
38 chr1:171564200-171567000 Weak transcription Brain Germinal Matrix brain
39 chr1:171564200-171567600 Enhancers Primary neutrophils fromperipheralblood blood
40 chr1:171564400-171567200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr1:171564400-171567600 Weak transcription Fetal Thymus thymus
42 chr1:171564400-171568600 Weak transcription NH-A brain
43 chr1:171564400-171569400 Weak transcription Brain Anterior Caudate brain
44 chr1:171564400-171570600 Weak transcription Brain Cingulate Gyrus brain
45 chr1:171564400-171572000 Weak transcription HUES6 Cell Line embryonic stem cell
46 chr1:171564400-171573000 Weak transcription Adipose Nuclei Adipose
47 chr1:171564600-171567000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
48 chr1:171564600-171567400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
49 chr1:171564600-171568200 Weak transcription Osteobl bone
50 chr1:171564600-171568400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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Last update: Aug 31, 2015