Variant report

Variant	rs2355105
Chromosome Location	chr7:11868968-11868969
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10243925	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10259477	0.94[EUR][1000 genomes]
rs10282397	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13226381	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2355101	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2355110	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2355113	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2355114	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36083223	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6460847	0.89[EUR][1000 genomes]
rs6460850	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6460851	0.93[EUR][1000 genomes]
rs6943249	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6951563	0.92[EUR][1000 genomes]
rs6964003	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7807946	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv830905	chr7:11793513-11941594	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11858400-11869800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:11858800-11869000	Weak transcription	Fetal Lung	lung
3	chr7:11860600-11869200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:11866800-11869600	Weak transcription	Fetal Heart	heart
5	chr7:11867400-11873400	Active TSS	A549	lung
6	chr7:11868400-11869200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:11868600-11869600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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