Variant report

Variant	rs2355110
Chromosome Location	chr7:11881798-11881799
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10228370	0.83[AMR][1000 genomes]
rs10243925	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10259477	0.97[EUR][1000 genomes]
rs10282397	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13226381	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2355101	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2355105	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2355106	0.81[CEU][hapmap]
rs2355107	0.81[EUR][1000 genomes]
rs2355111	0.81[EUR][1000 genomes]
rs2355113	0.96[EUR][1000 genomes]
rs2355114	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2883596	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs36083223	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4721016	0.81[EUR][1000 genomes]
rs6460847	0.87[EUR][1000 genomes]
rs6460850	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6460851	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6943249	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6951563	0.95[EUR][1000 genomes]
rs6964003	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6978088	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs7807756	0.96[CEU][hapmap]
rs7807946	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv830905	chr7:11793513-11941594	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv606203	chr7:11870711-11915630	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887615	chr7:11870711-11938060	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11881200-11881800	ZNF genes & repeats	Right Atrium	heart

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