Variant report

Variant	rs6460847
Chromosome Location	chr7:11856707-11856708
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10243925	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10259477	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10282397	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13226381	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2355101	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2355105	0.89[EUR][1000 genomes]
rs2355110	0.87[EUR][1000 genomes]
rs2355113	0.87[EUR][1000 genomes]
rs2355114	0.86[EUR][1000 genomes]
rs36083223	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6460850	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6460851	0.86[EUR][1000 genomes]
rs6943249	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6951563	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6964003	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7807756	0.88[CEU][hapmap]
rs7807946	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv830905	chr7:11793513-11941594	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv981768	chr7:11852721-11857953	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11855400-11856800	Enhancers	A549	lung
2	chr7:11855800-11856800	Weak transcription	Fetal Kidney	kidney
3	chr7:11856400-11856800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:11856400-11857200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:11856400-11857400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:11856400-11857600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:11856400-11858200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:11856600-11857000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:11856600-11857200	Enhancers	Duodenum Mucosa	Duodenum
10	chr7:11856600-11857400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr7:11856600-11857400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:11856600-11857600	Enhancers	Fetal Brain Male	brain
13	chr7:11856600-11858600	Enhancers	HUVEC	blood vessel
14	chr7:11856600-11858800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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