Variant report

Variant	rs2358710
Chromosome Location	chr5:75569502-75569503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10942765	0.91[ASN][1000 genomes]
rs13174383	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13188781	0.95[ASN][1000 genomes]
rs1995381	0.98[ASN][1000 genomes]
rs2358712	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs246813	0.91[ASN][1000 genomes]
rs246814	0.91[ASN][1000 genomes]
rs246815	0.91[ASN][1000 genomes]
rs2937748	0.98[ASN][1000 genomes]
rs2937749	0.98[ASN][1000 genomes]
rs2937750	0.98[ASN][1000 genomes]
rs2937751	0.81[ASN][1000 genomes]
rs2937752	0.98[ASN][1000 genomes]
rs2972836	0.98[ASN][1000 genomes]
rs2972837	0.84[ASN][1000 genomes]
rs2972838	0.98[ASN][1000 genomes]
rs2972839	0.98[ASN][1000 genomes]
rs2972840	0.98[ASN][1000 genomes]
rs31244	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34596551	0.95[ASN][1000 genomes]
rs35764719	0.93[ASN][1000 genomes]
rs35930860	0.95[ASN][1000 genomes]
rs35966882	0.95[ASN][1000 genomes]
rs35984318	0.98[ASN][1000 genomes]
rs4352583	0.95[ASN][1000 genomes]
rs4496693	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4546360	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4566770	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4566771	0.93[ASN][1000 genomes]
rs4613682	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6453213	0.95[ASN][1000 genomes]
rs6453214	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs67771044	0.95[ASN][1000 genomes]
rs6874435	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6875731	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6876070	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6891108	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7730153	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv980979	chr5:75561934-75576226	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75557200-75574000	Weak transcription	Right Atrium	heart
2	chr5:75567000-75570400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr5:75567800-75571600	Enhancers	Fetal Lung	lung
4	chr5:75568000-75571000	Enhancers	Primary hematopoietic stem cells	blood
5	chr5:75568400-75570200	Enhancers	Duodenum Mucosa	Duodenum
6	chr5:75568600-75569600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:75569000-75569800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr5:75569200-75569600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:75569200-75569800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:75569200-75569800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr5:75569200-75569800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr5:75569200-75569800	Enhancers	Fetal Heart	heart
13	chr5:75569200-75569800	Enhancers	Placenta	Placenta
14	chr5:75569200-75569800	Enhancers	Fetal Stomach	stomach
15	chr5:75569200-75569800	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr5:75569200-75569800	Enhancers	HUVEC	blood vessel
17	chr5:75569200-75570000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:75569200-75570000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:75569200-75570000	Enhancers	Adipose Nuclei	Adipose
20	chr5:75569200-75570000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr5:75569200-75570200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:75569400-75569600	Enhancers	Liver	Liver
23	chr5:75569400-75569800	Enhancers	Fetal Muscle Leg	muscle
24	chr5:75569400-75569800	Enhancers	Fetal Thymus	thymus
25	chr5:75569400-75569800	Enhancers	Lung	lung
26	chr5:75569400-75569800	Enhancers	Sigmoid Colon	Sigmoid Colon

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