Variant report

Variant	rs13174383
Chromosome Location	chr5:75580416-75580417
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75579207..75582130-chr5:75586458..75589313,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122012	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10942765	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13188781	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1995381	0.96[ASN][1000 genomes]
rs2270927	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2358710	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2358712	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs246813	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs246814	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs246815	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2913265	0.82[AMR][1000 genomes]
rs2937748	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2937749	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2937750	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2937752	0.96[ASN][1000 genomes]
rs2972836	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2972837	0.82[ASN][1000 genomes]
rs2972838	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2972839	0.96[ASN][1000 genomes]
rs2972840	0.96[ASN][1000 genomes]
rs31243	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs31244	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34596551	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35662301	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35764719	0.91[ASN][1000 genomes]
rs35930860	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35966882	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35984318	0.96[ASN][1000 genomes]
rs4352583	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4496693	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4546360	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4566770	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4566771	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4613682	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6453213	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6453214	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs67560206	0.85[AMR][1000 genomes]
rs67771044	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6874435	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6875731	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876070	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6891108	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7730153	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75576000-75582800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:75576200-75583200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:75576800-75584800	Weak transcription	Gastric	stomach
4	chr5:75579000-75580600	Enhancers	NHEK	skin
5	chr5:75580200-75580600	Enhancers	Esophagus	oesophagus
6	chr5:75580200-75580800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr5:75580400-75580600	Enhancers	Pancreas	Pancrea
8	chr5:75580400-75580800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:75580400-75586000	Weak transcription	HMEC	breast
10	chr5:75580400-75586400	Weak transcription	Primary hematopoietic stem cells	blood

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