Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75590828..75593662-chr5:75594110..75596646,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10942765	0.81[AMR][1000 genomes]
rs13174383	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13188781	0.81[AMR][1000 genomes]
rs2358712	0.85[AMR][1000 genomes]
rs246813	0.83[AMR][1000 genomes]
rs246814	0.81[AMR][1000 genomes]
rs246815	0.81[AMR][1000 genomes]
rs31243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs31244	0.85[AMR][1000 genomes]
rs34596551	0.81[AMR][1000 genomes]
rs35662301	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35930860	0.81[AMR][1000 genomes]
rs35966882	0.91[AMR][1000 genomes]
rs4352583	0.81[AMR][1000 genomes]
rs4496693	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4546360	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4566770	0.86[AMR][1000 genomes]
rs4566771	0.89[AMR][1000 genomes]
rs4613682	0.84[AMR][1000 genomes]
rs6453213	0.91[AMR][1000 genomes]
rs6453214	0.85[AMR][1000 genomes]
rs67560206	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67771044	0.91[AMR][1000 genomes]
rs6874435	0.84[AMR][1000 genomes]
rs6875731	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6876070	0.85[AMR][1000 genomes]
rs6891108	0.85[AMR][1000 genomes]
rs7730153	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75585000-75593400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:75585000-75596000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr5:75586200-75592400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:75587400-75592200	Weak transcription	Liver	Liver
5	chr5:75587800-75591800	Enhancers	Primary hematopoietic stem cells	blood
6	chr5:75588200-75599800	Weak transcription	Pancreas	Pancrea
7	chr5:75588400-75599800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:75589000-75593400	Weak transcription	Fetal Intestine Small	intestine
9	chr5:75589600-75593200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr5:75590000-75593600	Weak transcription	Stomach Mucosa	stomach
11	chr5:75590600-75593200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:75590800-75595200	Weak transcription	GM12878-XiMat	blood
13	chr5:75591200-75592200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:75591200-75592800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr5:75591200-75592800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr5:75591400-75592400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:75591400-75593200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr5:75591400-75594600	Weak transcription	Fetal Thymus	thymus
19	chr5:75591600-75593200	Enhancers	HUES64 Cell Line	embryonic stem cell

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