Variant report

Variant	rs6874435
Chromosome Location	chr5:75574855-75574856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75562690..75565535-chr5:75573253..75575190,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10942765	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13174383	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13188781	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1995381	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[ASN][1000 genomes]
rs2270927	0.84[AMR][1000 genomes]
rs2358710	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2358712	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes]
rs246813	0.85[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.96[ASN][1000 genomes]
rs246814	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs246815	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2937747	0.84[CHD][hapmap]
rs2937748	1.00[CHB][hapmap];0.89[CHD][hapmap];0.96[ASN][1000 genomes]
rs2937749	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs2937750	0.96[ASN][1000 genomes]
rs2937752	0.96[ASN][1000 genomes]
rs2972836	0.96[ASN][1000 genomes]
rs2972837	0.82[ASN][1000 genomes]
rs2972838	0.96[ASN][1000 genomes]
rs2972839	0.96[ASN][1000 genomes]
rs2972840	0.96[ASN][1000 genomes]
rs2972843	0.84[CHD][hapmap]
rs31243	0.93[MEX][hapmap];0.84[AMR][1000 genomes]
rs31244	0.89[CHD][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs34596551	1.00[ASN][1000 genomes]
rs35662301	0.82[AMR][1000 genomes]
rs35764719	0.91[ASN][1000 genomes]
rs35930860	1.00[ASN][1000 genomes]
rs35966882	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35984318	0.96[ASN][1000 genomes]
rs4352583	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4496693	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4546360	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4566770	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4566771	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4613682	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453213	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6453214	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs67771044	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6875731	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6876070	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6891108	1.00[ASN][1000 genomes]
rs7730153	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv980979	chr5:75561934-75576226	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75569800-75576200	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:75572200-75576000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:75573200-75576200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr5:75573200-75576200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:75574200-75575400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:75574400-75575400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr5:75574800-75575000	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links