Variant report

Variant	rs2359551
Chromosome Location	chr1:213115696-213115697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17020073	1.00[EUR][1000 genomes]
rs56852884	0.91[AFR][1000 genomes]
rs73084214	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73084220	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73084247	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74140537	1.00[EUR][1000 genomes]
rs74140541	1.00[EUR][1000 genomes]
rs74140543	1.00[EUR][1000 genomes]
rs7518378	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7520957	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008594	chr1:213110654-213236750	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213102800-213116000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:213107800-213119400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:213112400-213116000	Weak transcription	GM12878-XiMat	blood
4	chr1:213115600-213117000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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