Variant report

Variant	rs73084214
Chromosome Location	chr1:213102424-213102425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:213094798..213097426-chr1:213100540..213102922,3	K562	blood:
2	chr1:212964099..212966838-chr1:213100837..213103616,2	K562	blood:
3	chr1:212963009..212966838-chr1:213099480..213103616,4	K562	blood:
4	chr1:213100809..213102648-chr1:213104742..213106432,2	K562	blood:

Variant related genes	Relation type
ENSG00000117697	Chromatin interaction
ENSG00000203705	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17020073	1.00[EUR][1000 genomes]
rs2359551	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56852884	0.89[AFR][1000 genomes]
rs73084220	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73084247	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74140537	1.00[EUR][1000 genomes]
rs74140541	1.00[EUR][1000 genomes]
rs74140543	1.00[EUR][1000 genomes]
rs7518378	1.00[EUR][1000 genomes]
rs7520957	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008383	chr1:213025546-213114894	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213100600-213102600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:213100600-213103000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:213101200-213102600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:213101200-213102800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr1:213101200-213102800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:213101200-213102800	Enhancers	Fetal Lung	lung
7	chr1:213101200-213102800	Enhancers	Fetal Muscle Leg	muscle
8	chr1:213101200-213102800	Enhancers	Fetal Stomach	stomach
9	chr1:213101200-213103000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:213101200-213103000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr1:213101400-213102600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:213101400-213102600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:213101400-213102600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr1:213101400-213102800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr1:213101400-213102800	Enhancers	GM12878-XiMat	blood
16	chr1:213101400-213102800	Enhancers	HepG2	liver
17	chr1:213101600-213102600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:213101600-213102600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr1:213101600-213102600	Enhancers	Fetal Thymus	thymus
20	chr1:213101800-213102600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:213101800-213102600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:213101800-213102600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:213101800-213102600	Enhancers	Primary hematopoietic stem cells	blood
24	chr1:213101800-213102600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr1:213101800-213102600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:213101800-213102600	Enhancers	HSMMtube	muscle
27	chr1:213101800-213102800	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr1:213101800-213102800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:213102000-213102600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:213102000-213102800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr1:213102000-213102800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr1:213102000-213102800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr1:213102200-213102600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr1:213102200-213102600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
35	chr1:213102200-213102800	Enhancers	A549	lung
36	chr1:213102200-213104400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr1:213102400-213102800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr1:213102400-213104800	Weak transcription	Stomach Mucosa	stomach
39	chr1:213102400-213115200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links