Variant report

Variant	rs56852884
Chromosome Location	chr1:213125701-213125702
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2359551	0.91[AFR][1000 genomes]
rs73084214	0.89[AFR][1000 genomes]
rs73084220	0.94[AFR][1000 genomes]
rs73084247	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008594	chr1:213110654-213236750	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213123400-213125800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:213123600-213125800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:213123600-213126200	Active TSS	Brain Anterior Caudate	brain
4	chr1:213123800-213126000	Active TSS	Hela-S3	cervix
5	chr1:213124600-213125800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:213124600-213125800	Enhancers	A549	lung
7	chr1:213124800-213127000	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
8	chr1:213125000-213126400	Transcr. at gene 5' and 3'	H9 Cell Line	embryonic stem cell
9	chr1:213125000-213126400	Transcr. at gene 5' and 3'	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:213125000-213127000	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
11	chr1:213125000-213127200	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
12	chr1:213125000-213127400	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
13	chr1:213125200-213126000	Flanking Active TSS	Fetal Lung	lung
14	chr1:213125200-213126200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:213125200-213126200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr1:213125200-213126800	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
17	chr1:213125200-213127200	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
18	chr1:213125200-213127400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:213125200-213129400	Weak transcription	Thymus	Thymus
20	chr1:213125200-213132800	Weak transcription	Lung	lung
21	chr1:213125200-213134200	Weak transcription	Right Atrium	heart
22	chr1:213125400-213125800	Enhancers	Brain Cingulate Gyrus	brain
23	chr1:213125400-213126000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr1:213125400-213126000	Transcr. at gene 5' and 3'	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:213125400-213126000	Enhancers	Colon Smooth Muscle	Colon
26	chr1:213125400-213126000	Flanking Active TSS	Fetal Brain Male	brain
27	chr1:213125400-213126000	Flanking Active TSS	Fetal Brain Female	brain
28	chr1:213125400-213126000	Flanking Active TSS	Fetal Kidney	kidney
29	chr1:213125400-213126000	Weak transcription	Psoas Muscle	Psoas
30	chr1:213125400-213126200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:213125400-213126200	Bivalent Enhancer	Adipose Nuclei	Adipose
32	chr1:213125400-213126200	Flanking Active TSS	Brain Germinal Matrix	brain
33	chr1:213125400-213126400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:213125400-213126600	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
35	chr1:213125400-213127000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr1:213125400-213127200	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
37	chr1:213125600-213125800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr1:213125600-213125800	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:213125600-213125800	Active TSS	Fetal Muscle Leg	muscle
40	chr1:213125600-213125800	Active TSS	HSMM	muscle
41	chr1:213125600-213126000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr1:213125600-213126000	Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr1:213125600-213126000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
44	chr1:213125600-213126000	Active TSS	Fetal Muscle Trunk	muscle
45	chr1:213125600-213126000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
46	chr1:213125600-213126000	Active TSS	GM12878-XiMat	blood
47	chr1:213125600-213126200	Enhancers	Fetal Stomach	stomach
48	chr1:213125600-213126200	Weak transcription	Fetal Thymus	thymus
49	chr1:213125600-213126400	Active TSS	HSMMtube	muscle
50	chr1:213125600-213126600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links