Variant report

Variant	rs2363692
Chromosome Location	chr12:73897716-73897717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10785046	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11829241	0.83[AMR][1000 genomes]
rs11829338	0.83[AMR][1000 genomes]
rs1822511	0.83[AMR][1000 genomes]
rs1822512	0.83[AMR][1000 genomes]
rs2197284	0.83[AMR][1000 genomes]
rs2197288	0.83[AMR][1000 genomes]
rs2586945	0.83[AMR][1000 genomes]
rs2730495	0.83[AMR][1000 genomes]
rs2730496	1.00[AMR][1000 genomes]
rs34655500	0.83[AMR][1000 genomes]
rs59217805	0.83[AMR][1000 genomes]
rs7311773	1.00[AMR][1000 genomes]
rs73336957	0.83[AMR][1000 genomes]
rs73336969	0.83[AMR][1000 genomes]
rs73336977	0.83[AMR][1000 genomes]
rs73339198	0.83[AMR][1000 genomes]
rs73340908	1.00[AMR][1000 genomes]
rs7957863	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7966113	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832457	chr12:73784588-74011986	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1043656	chr12:73795943-74341905	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv541536	chr12:73795943-74341905	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv899278	chr12:73841211-73977563	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv832458	chr12:73885329-74075491	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:73896200-73901400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:73897400-73898200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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