Variant report
| Variant | rs7311773 |
|---|---|
| Chromosome Location | chr12:73915147-73915148 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TRHDE-4 | chr12:73914766-73915164 | l_679_chr12:73914765-73931279_testes |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10785046 | 1.00[AMR][1000 genomes] |
| rs11829241 | 0.83[AMR][1000 genomes] |
| rs11829338 | 0.83[AMR][1000 genomes] |
| rs1822511 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs1822512 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs1964445 | 0.86[AFR][1000 genomes] |
| rs2197284 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs2197288 | 0.83[AMR][1000 genomes] |
| rs2363692 | 1.00[AMR][1000 genomes] |
| rs2586945 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs2730495 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs2730496 | 1.00[AMR][1000 genomes] |
| rs34655500 | 0.83[AMR][1000 genomes] |
| rs59217805 | 0.83[AMR][1000 genomes] |
| rs73336957 | 0.83[AMR][1000 genomes] |
| rs73336969 | 0.83[AMR][1000 genomes] |
| rs73336977 | 0.83[AMR][1000 genomes] |
| rs73339198 | 0.83[AMR][1000 genomes] |
| rs73340908 | 1.00[AMR][1000 genomes] |
| rs7957863 | 1.00[AMR][1000 genomes] |
| rs7966113 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832457 | chr12:73784588-74011986 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1043656 | chr12:73795943-74341905 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv541536 | chr12:73795943-74341905 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv899278 | chr12:73841211-73977563 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv832458 | chr12:73885329-74075491 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | nsv1037030 | chr12:73898311-74656764 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 7 | nsv541537 | chr12:73898311-74656764 | ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
