Variant report

Variant	rs73336969
Chromosome Location	chr12:73783105-73783106
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10785046	0.83[AMR][1000 genomes]
rs11829241	1.00[AMR][1000 genomes]
rs11829338	1.00[AMR][1000 genomes]
rs2363692	0.83[AMR][1000 genomes]
rs2730496	0.83[AMR][1000 genomes]
rs34655500	1.00[AMR][1000 genomes]
rs59217805	1.00[AMR][1000 genomes]
rs7311773	0.83[AMR][1000 genomes]
rs73336946	0.88[AFR][1000 genomes]
rs73336949	0.86[AFR][1000 genomes]
rs73336957	1.00[AMR][1000 genomes]
rs73336977	1.00[AMR][1000 genomes]
rs73339198	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73340908	0.83[AMR][1000 genomes]
rs7957863	0.83[AMR][1000 genomes]
rs7966113	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899274	chr12:73510254-73875790	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv899277	chr12:73773886-73875790	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:73779000-73784200	Weak transcription	Stomach Mucosa	stomach
2	chr12:73779400-73784400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr12:73779600-73783600	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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