Variant report

Variant	rs236381
Chromosome Location	chr6:36787859-36787860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36787597..36789136-chr6:36828345..36830659,2	K562	blood:
2	chr6:36773345..36779007-chr6:36781700..36788311,6	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1007956	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs11751844	0.84[CEU][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs11758807	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs2007290	1.00[CEU][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28656041	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28673271	0.97[ASN][1000 genomes]
rs4711470	0.97[ASN][1000 genomes]
rs4714015	0.84[CEU][hapmap]
rs60097056	0.95[ASN][1000 genomes]
rs62406628	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62406629	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72856461	0.98[EUR][1000 genomes]
rs7745099	0.84[CEU][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes]
rs9368961	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9368963	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9368964	0.88[ASN][1000 genomes]
rs9380603	1.00[CEU][hapmap];0.90[JPT][hapmap];0.98[EUR][1000 genomes]
rs9380605	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs9380607	0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9394387	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36762600-36789600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:36774200-36788600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:36777000-36797800	Weak transcription	Pancreas	Pancrea
4	chr6:36779000-36788000	Weak transcription	HUVEC	blood vessel
5	chr6:36779000-36789200	Weak transcription	Left Ventricle	heart
6	chr6:36779000-36789400	Weak transcription	Fetal Stomach	stomach
7	chr6:36779000-36794000	Weak transcription	Brain Germinal Matrix	brain
8	chr6:36779200-36789400	Weak transcription	Right Ventricle	heart
9	chr6:36779400-36797600	Weak transcription	Fetal Brain Female	brain
10	chr6:36781400-36789000	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:36781600-36794200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:36784400-36788400	Weak transcription	HMEC	breast
13	chr6:36785400-36788000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:36785600-36788400	Enhancers	Fetal Kidney	kidney
15	chr6:36786000-36789400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:36786000-36790800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:36786200-36788800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:36786200-36788800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:36786200-36788800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:36786200-36789000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:36786200-36789200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:36786200-36789200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:36787000-36791200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:36787200-36788000	Strong transcription	Brain Anterior Caudate	brain
25	chr6:36787400-36788000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:36787400-36788200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:36787400-36788200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr6:36787400-36796400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:36787600-36788000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:36787600-36788000	Strong transcription	Fetal Muscle Trunk	muscle
31	chr6:36787600-36788200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:36787600-36788200	Flanking Active TSS	HepG2	liver
33	chr6:36787600-36788600	Weak transcription	Fetal Muscle Leg	muscle
34	chr6:36787600-36789400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:36787600-36790600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:36787800-36788400	Enhancers	K562	blood
37	chr6:36787800-36790600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links