Variant report

Variant	rs60097056
Chromosome Location	chr6:36796924-36796925
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36795450..36797184-chr6:36798475..36800268,2	MCF-7	breast:
2	chr6:36735205..36738039-chr6:36795328..36797807,2	K562	blood:
3	chr6:36794960..36797017-chr6:36818260..36820420,2	MCF-7	breast:
4	chr6:36795234..36797828-chr6:36799282..36801814,2	MCF-7	breast:
5	chr6:36789119..36791202-chr6:36794316..36796954,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11751790	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11751844	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11754437	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11756425	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11758600	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11758807	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12661551	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2071822	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2071823	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs236381	0.95[ASN][1000 genomes]
rs28656041	0.95[ASN][1000 genomes]
rs28673271	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711470	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711472	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4714015	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4714019	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62406642	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62406644	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6910582	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6913047	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72846083	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9349015	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9368961	0.95[ASN][1000 genomes]
rs9368963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368964	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9368965	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9380605	0.87[ASN][1000 genomes]
rs9380607	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380614	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9394387	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36777000-36797800	Weak transcription	Pancreas	Pancrea
2	chr6:36779400-36797600	Weak transcription	Fetal Brain Female	brain
3	chr6:36788400-36802400	Weak transcription	Fetal Kidney	kidney
4	chr6:36788800-36797200	Enhancers	Right Atrium	heart
5	chr6:36789800-36802200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:36790600-36799400	Enhancers	Fetal Muscle Leg	muscle
7	chr6:36791200-36805800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:36791400-36798000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:36791600-36797000	Enhancers	Right Ventricle	heart
10	chr6:36794000-36797200	Weak transcription	Fetal Intestine Small	intestine
11	chr6:36794800-36797200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr6:36794800-36797600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr6:36794800-36797600	Enhancers	HepG2	liver
14	chr6:36795000-36797800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:36795200-36797600	Weak transcription	Stomach Mucosa	stomach
16	chr6:36795200-36797800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:36795200-36798600	Enhancers	HUVEC	blood vessel
18	chr6:36795200-36802600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:36795400-36797600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:36795400-36797800	Weak transcription	Brain Substantia Nigra	brain
21	chr6:36795400-36798800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:36795600-36797000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:36795600-36797600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr6:36795600-36797800	Weak transcription	Esophagus	oesophagus
25	chr6:36795600-36797800	Weak transcription	Lung	lung
26	chr6:36795600-36797800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:36795600-36798000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:36795800-36797600	Weak transcription	Brain Angular Gyrus	brain
29	chr6:36795800-36797800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:36795800-36797800	Weak transcription	HSMM	muscle
31	chr6:36795800-36797800	Weak transcription	NHEK	skin
32	chr6:36795800-36801800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:36795800-36802200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:36796000-36797000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:36796000-36797400	Weak transcription	Fetal Brain Male	brain
36	chr6:36796000-36797600	Weak transcription	Brain Germinal Matrix	brain
37	chr6:36796000-36797600	Weak transcription	Fetal Stomach	stomach
38	chr6:36796000-36797800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr6:36796000-36797800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:36796000-36797800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr6:36796000-36797800	Weak transcription	Ovary	ovary
42	chr6:36796000-36797800	Weak transcription	Spleen	Spleen
43	chr6:36796000-36797800	Weak transcription	HMEC	breast
44	chr6:36796000-36797800	Weak transcription	Osteobl	bone
45	chr6:36796000-36798000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:36796200-36797600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:36796200-36797600	Weak transcription	Fetal Lung	lung
48	chr6:36796200-36797800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:36796400-36797000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
50	chr6:36796400-36797600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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