Variant report

Variant	rs4714015
Chromosome Location	chr6:36805605-36805606
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36759479..36761835-chr6:36805392..36807104,2	MCF-7	breast:
2	chr6:36803997..36809047-chr6:36852852..36856509,4	K562	blood:
3	chr6:36804882..36807604-chr6:36813482..36815194,2	MCF-7	breast:
4	chr6:36802135..36806247-chr6:36814930..36817365,4	K562	blood:
5	chr6:36804125..36807562-chr6:36952553..36955386,3	K562	blood:
6	chr6:36803679..36805737-chr6:36818259..36820032,3	K562	blood:
7	chr6:36804125..36806992-chr6:36952553..36954934,2	K562	blood:

Variant related genes	Relation type
ENSG00000198663	Chromatin interaction
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11751790	0.84[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11751844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11754437	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11756425	0.84[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11758600	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11758807	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12661551	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2007290	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs2071822	0.84[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2071823	0.84[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2293381	1.00[YRI][hapmap]
rs236381	0.84[CEU][hapmap]
rs28673271	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3176344	1.00[YRI][hapmap]
rs3213536	1.00[YRI][hapmap]
rs4711470	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4711472	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4714019	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60097056	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62406642	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62406644	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6910582	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6912602	0.84[CEU][hapmap]
rs6913047	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs72846083	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9349015	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9368963	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9368964	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9368965	0.89[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9380603	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs9380607	0.81[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9380614	0.89[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9394387	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5262	chr6:36799329-36826210	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36791200-36805800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:36798600-36806800	Weak transcription	Ovary	ovary
3	chr6:36802200-36806400	Enhancers	Fetal Heart	heart
4	chr6:36803000-36805800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:36803000-36806000	Weak transcription	Left Ventricle	heart
6	chr6:36803000-36806400	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:36803200-36806000	Weak transcription	Fetal Brain Female	brain
8	chr6:36803200-36806400	Weak transcription	Fetal Brain Male	brain
9	chr6:36803200-36806600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:36803400-36806200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:36803800-36806600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr6:36804000-36807000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:36804000-36808200	Active TSS	Brain Anterior Caudate	brain
14	chr6:36804600-36806000	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr6:36805200-36807200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr6:36805400-36806000	Enhancers	Right Ventricle	heart
17	chr6:36805400-36806200	Enhancers	HUVEC	blood vessel
18	chr6:36805600-36806800	Active TSS	Right Atrium	heart

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