Variant report

Variant	rs2364394
Chromosome Location	chr7:140365964-140365965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140365461..140369460-chr7:140370034..140373881,3	K562	blood:

Variant related genes	Relation type
ENSG00000133597	Chromatin interaction
ENSG00000146966	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10241711	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs10260676	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1046515	0.81[ASN][1000 genomes]
rs1140034	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12375245	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs1267600	0.91[CHB][hapmap]
rs1267601	0.91[CHB][hapmap]
rs1267606	0.91[CHB][hapmap]
rs1267611	0.81[CHB][hapmap]
rs1267613	0.81[CHB][hapmap]
rs1267619	0.91[CHB][hapmap]
rs1267636	0.81[CHB][hapmap]
rs1267638	0.91[CHB][hapmap]
rs1267642	0.81[CHB][hapmap]
rs1267643	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1267644	0.81[CHB][hapmap]
rs1267649	0.91[CHB][hapmap]
rs1639675	0.91[CHB][hapmap]
rs1639678	0.91[CHB][hapmap]
rs1639679	0.81[CHB][hapmap]
rs17161666	0.83[CHB][hapmap]
rs17161668	0.83[ASN][1000 genomes]
rs1733827	0.91[CHB][hapmap]
rs1733832	0.91[CHB][hapmap]
rs2364393	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364395	0.85[ASN][1000 genomes]
rs2364396	0.83[CHB][hapmap]
rs2364397	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2535951	0.91[CHB][hapmap]
rs28517771	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2930331	0.90[ASN][1000 genomes]
rs2968550	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2968553	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2968555	0.81[ASN][1000 genomes]
rs2968558	0.85[ASN][1000 genomes]
rs2968559	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4624945	0.85[ASN][1000 genomes]
rs4725799	0.83[ASN][1000 genomes]
rs4727011	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4727021	0.83[ASN][1000 genomes]
rs4727036	0.83[ASN][1000 genomes]
rs4727040	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs4727041	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs6464036	0.91[CHB][hapmap]
rs6464937	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs73491672	0.81[ASN][1000 genomes]
rs73505645	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73505647	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7792746	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7794857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803697	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7809339	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv3371455	chr7:140362383-140366581	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140365800-140372000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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