Variant report

Variant	rs7792746
Chromosome Location	chr7:140367908-140367909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140365461..140369460-chr7:140370034..140373881,3	K562	blood:
2	chr7:140367204..140371045-chr7:140371353..140375077,7	MCF-7	breast:
3	chr7:140366280..140367939-chr7:140371289..140372844,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146966	Chromatin interaction
ENSG00000133597	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10241711	0.83[CHB][hapmap];0.85[ASN][1000 genomes]
rs10260676	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1046515	0.89[ASN][1000 genomes]
rs1140034	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12375245	0.83[CHB][hapmap];0.89[GIH][hapmap];0.92[ASN][1000 genomes]
rs1267600	0.91[CHB][hapmap]
rs1267601	0.91[CHB][hapmap];0.82[GIH][hapmap]
rs1267606	0.91[CHB][hapmap];0.82[GIH][hapmap]
rs1267611	0.81[CHB][hapmap];0.82[GIH][hapmap]
rs1267613	0.81[CHB][hapmap]
rs1267614	0.82[GIH][hapmap]
rs1267619	0.91[CHB][hapmap];0.82[GIH][hapmap]
rs1267636	0.81[CHB][hapmap];0.82[GIH][hapmap]
rs1267638	0.91[CHB][hapmap];0.81[GIH][hapmap]
rs1267642	0.81[CHB][hapmap];0.82[GIH][hapmap]
rs1267643	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1267644	0.81[CHB][hapmap]
rs1267649	0.91[CHB][hapmap];0.82[GIH][hapmap]
rs1639675	0.91[CHB][hapmap]
rs1639678	0.91[CHB][hapmap]
rs1639679	0.81[CHB][hapmap];0.82[GIH][hapmap]
rs17161666	0.83[CHB][hapmap];0.87[ASN][1000 genomes]
rs17161668	0.92[ASN][1000 genomes]
rs1733827	0.91[CHB][hapmap];0.82[GIH][hapmap]
rs1733832	0.91[CHB][hapmap]
rs2364393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2364394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2364395	0.88[ASN][1000 genomes]
rs2364396	0.83[CHB][hapmap];0.89[GIH][hapmap];0.81[ASN][1000 genomes]
rs2364397	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2364398	0.82[GIH][hapmap]
rs2535951	0.91[CHB][hapmap];0.82[GIH][hapmap]
rs28517771	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2907950	0.81[ASN][1000 genomes]
rs2930315	0.83[ASN][1000 genomes]
rs2930318	0.83[ASN][1000 genomes]
rs2930319	0.83[ASN][1000 genomes]
rs2930331	0.82[ASN][1000 genomes]
rs2968550	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2968551	0.81[ASN][1000 genomes]
rs2968553	0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2968555	0.85[ASN][1000 genomes]
rs2968558	0.88[ASN][1000 genomes]
rs2968559	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4624945	0.88[ASN][1000 genomes]
rs4725799	0.92[ASN][1000 genomes]
rs4727011	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4727021	0.92[ASN][1000 genomes]
rs4727036	0.92[ASN][1000 genomes]
rs4727040	0.83[CHB][hapmap];0.89[GIH][hapmap];0.89[ASN][1000 genomes]
rs4727041	0.83[CHB][hapmap];0.89[GIH][hapmap];0.89[ASN][1000 genomes]
rs4727053	0.87[ASN][1000 genomes]
rs6464036	0.91[CHB][hapmap];0.82[GIH][hapmap]
rs6464937	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6969779	0.87[ASN][1000 genomes]
rs73491672	0.90[ASN][1000 genomes]
rs73505645	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73505647	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794857	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7803697	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7809339	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140365800-140372000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr7:140367400-140371800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:140367600-140370600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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