Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140365461..140369460-chr7:140370034..140373881,3	K562	blood:
2	chr7:140366280..140367939-chr7:140371289..140372844,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146966	Chromatin interaction
ENSG00000133597	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10241711	0.81[ASN][1000 genomes]
rs10260676	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1046515	0.81[ASN][1000 genomes]
rs1140034	0.85[ASN][1000 genomes]
rs12375245	0.83[ASN][1000 genomes]
rs17161668	0.83[ASN][1000 genomes]
rs2364393	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364395	0.85[ASN][1000 genomes]
rs28517771	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2930331	0.90[ASN][1000 genomes]
rs2968555	0.81[ASN][1000 genomes]
rs2968558	0.85[ASN][1000 genomes]
rs2968559	0.85[ASN][1000 genomes]
rs4624945	0.85[ASN][1000 genomes]
rs4725799	0.83[ASN][1000 genomes]
rs4727011	0.85[ASN][1000 genomes]
rs4727021	0.83[ASN][1000 genomes]
rs4727036	0.83[ASN][1000 genomes]
rs4727040	0.81[ASN][1000 genomes]
rs4727041	0.81[ASN][1000 genomes]
rs6464937	0.85[ASN][1000 genomes]
rs73491672	0.81[ASN][1000 genomes]
rs73505645	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73505647	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7792746	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7809339	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv3371455	chr7:140362383-140366581	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140365800-140372000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr7:140366400-140367400	Enhancers	Placenta Amnion	Placenta Amnion

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