Variant report

Variant	rs2374053
Chromosome Location	chr12:103747178-103747179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10860978	0.83[TSI][hapmap]
rs11111510	0.81[TSI][hapmap]
rs12578952	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1464321	0.83[CEU][hapmap]
rs1915110	0.82[EUR][1000 genomes]
rs2374054	0.83[CEU][hapmap]
rs6419384	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs6539064	0.84[EUR][1000 genomes]
rs7134630	0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs7138383	0.89[MEX][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs7308188	0.83[CEU][hapmap]
rs7488867	0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs7961837	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103707200-103786400	Weak transcription	Primary B cells from cord blood	blood
2	chr12:103745600-103755800	Weak transcription	Spleen	Spleen
3	chr12:103745800-103750000	Strong transcription	Primary B cells from peripheral blood	blood
4	chr12:103746800-103747200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr12:103746800-103747600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links