Variant report

Variant	rs7488867
Chromosome Location	chr12:103699685-103699686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103695455..103698300-chr12:103699189..103701415,2	K562	blood:
2	chr12:103698904..103701727-chr12:103704570..103706923,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10778229	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10860978	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs11111510	0.90[CEU][hapmap];0.82[TSI][hapmap]
rs11830344	0.85[CEU][hapmap]
rs12311525	0.95[CEU][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12578952	0.83[EUR][1000 genomes]
rs1464321	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs1520190	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs1520191	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs1915110	0.90[CEU][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2373979	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs2374053	0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs2888710	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4379920	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6419384	0.89[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6539064	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7134630	0.94[ASW][hapmap];0.85[CEU][hapmap];0.80[LWK][hapmap];0.85[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7138383	0.94[ASW][hapmap];0.85[CEU][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.96[EUR][1000 genomes]
rs7305590	0.86[EUR][1000 genomes]
rs7308188	0.90[CEU][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103696600-103703800	Weak transcription	Fetal Brain Male	brain
2	chr12:103698600-103700000	Strong transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links