Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103698904..103701727-chr12:103704570..103706923,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10778229	0.89[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10860978	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11111510	0.94[CEU][hapmap]
rs12311525	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12578952	0.84[EUR][1000 genomes]
rs1464321	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1520190	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs1520191	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs1915110	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2373979	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs2374053	0.84[EUR][1000 genomes]
rs2888710	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4379920	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6419384	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6539066	0.81[CEU][hapmap]
rs7134630	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7138383	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7305590	0.85[EUR][1000 genomes]
rs7308188	0.94[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7488867	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103700000-103707000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr12:103706600-103708200	Enhancers	GM12878-XiMat	blood

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