Variant report

Variant	rs10778229
Chromosome Location	chr12:103692799-103692800
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10860978	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap]
rs11111510	0.95[CEU][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap]
rs11830344	0.89[CEU][hapmap]
rs12311525	0.90[CEU][hapmap];0.81[MEX][hapmap];0.87[EUR][1000 genomes]
rs1464321	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs1520190	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs1520191	0.84[CEU][hapmap];0.93[EUR][1000 genomes]
rs1915110	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs2373979	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2888710	0.85[EUR][1000 genomes]
rs6419384	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs6539064	0.89[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7134630	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs7138383	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs7305590	0.95[EUR][1000 genomes]
rs7308188	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs7488867	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103686000-103694800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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