Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11712970	0.93[ASN][1000 genomes]
rs11720926	0.93[ASN][1000 genomes]
rs12374020	0.81[EUR][1000 genomes]
rs1401038	0.81[EUR][1000 genomes]
rs16856077	1.00[EUR][1000 genomes]
rs16856117	0.93[ASN][1000 genomes]
rs28766026	1.00[EUR][1000 genomes]
rs3953795	0.93[ASN][1000 genomes]
rs4014219	0.93[ASN][1000 genomes]
rs4629380	0.93[ASN][1000 genomes]
rs55671730	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58083698	0.93[ASN][1000 genomes]
rs58166282	0.93[ASN][1000 genomes]
rs58839492	0.93[ASN][1000 genomes]
rs59988501	0.93[ASN][1000 genomes]
rs60576742	0.93[ASN][1000 genomes]
rs6440273	0.93[ASN][1000 genomes]
rs6789497	0.93[ASN][1000 genomes]
rs73011810	0.93[ASN][1000 genomes]
rs73871912	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73873589	0.93[ASN][1000 genomes]
rs73873592	0.93[ASN][1000 genomes]
rs73873602	0.93[ASN][1000 genomes]
rs73874931	0.93[ASN][1000 genomes]
rs73874932	0.93[ASN][1000 genomes]
rs7627891	0.93[ASN][1000 genomes]
rs7632306	0.93[ASN][1000 genomes]
rs7645211	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3357831	chr3:144433846-144790831	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3405013	chr3:144433866-144790801	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv829747	chr3:144463330-144654092	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1005754	chr3:144529346-144984363	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv525344	chr3:144584373-144663231	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144625600-144631600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:144627200-144634200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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