Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11712970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713813	0.98[EUR][1000 genomes]
rs11715590	0.90[EUR][1000 genomes]
rs11718366	0.93[EUR][1000 genomes]
rs11720926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16856117	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2375512	0.93[ASN][1000 genomes]
rs3953795	1.00[ASN][1000 genomes]
rs4014219	1.00[ASN][1000 genomes]
rs4629380	1.00[ASN][1000 genomes]
rs55671730	1.00[ASN][1000 genomes]
rs58083698	1.00[ASN][1000 genomes]
rs58166282	1.00[ASN][1000 genomes]
rs58839492	1.00[ASN][1000 genomes]
rs59988501	1.00[ASN][1000 genomes]
rs60576742	1.00[ASN][1000 genomes]
rs6440273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440277	0.90[EUR][1000 genomes]
rs6789497	1.00[ASN][1000 genomes]
rs6804497	0.90[EUR][1000 genomes]
rs73011810	1.00[ASN][1000 genomes]
rs73871912	1.00[ASN][1000 genomes]
rs73873589	1.00[ASN][1000 genomes]
rs73873592	1.00[ASN][1000 genomes]
rs73873602	1.00[ASN][1000 genomes]
rs73874931	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874932	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627891	1.00[ASN][1000 genomes]
rs7632741	0.93[EUR][1000 genomes]
rs7645211	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3357831	chr3:144433846-144790831	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3405013	chr3:144433866-144790801	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv829746	chr3:144451478-144618224	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv829747	chr3:144463330-144654092	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1005754	chr3:144529346-144984363	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv525344	chr3:144584373-144663231	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144583800-144587400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:144584600-144586600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr3:144584600-144586800	Enhancers	NHDF-Ad	bronchial
4	chr3:144584800-144586400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:144584800-144588000	Enhancers	Adipose Nuclei	Adipose
6	chr3:144585000-144588200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:144585400-144587200	Enhancers	Ovary	ovary
8	chr3:144585600-144586400	Enhancers	Fetal Stomach	stomach
9	chr3:144586200-144586400	Enhancers	Gastric	stomach

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