Variant report
| Variant | rs7627891 |
|---|---|
| Chromosome Location | chr3:144580707-144580708 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11712970 | 1.00[ASN][1000 genomes] |
| rs11720926 | 1.00[ASN][1000 genomes] |
| rs16856117 | 0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2375512 | 0.93[ASN][1000 genomes] |
| rs3953795 | 1.00[ASN][1000 genomes] |
| rs4014219 | 1.00[ASN][1000 genomes] |
| rs4629380 | 1.00[ASN][1000 genomes] |
| rs55671730 | 1.00[ASN][1000 genomes] |
| rs58083698 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58166282 | 1.00[ASN][1000 genomes] |
| rs58839492 | 1.00[ASN][1000 genomes] |
| rs59988501 | 1.00[ASN][1000 genomes] |
| rs60576742 | 0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6440273 | 1.00[ASN][1000 genomes] |
| rs6772877 | 0.82[AFR][1000 genomes] |
| rs6789497 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73011810 | 0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73871912 | 1.00[ASN][1000 genomes] |
| rs73873589 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73873592 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73873602 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73874931 | 0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73874932 | 0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7632306 | 1.00[ASN][1000 genomes] |
| rs7645211 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv591928 | chr3:144050897-144822081 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv3357831 | chr3:144433846-144790831 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3405013 | chr3:144433866-144790801 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv829746 | chr3:144451478-144618224 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv829747 | chr3:144463330-144654092 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv1005754 | chr3:144529346-144984363 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:144578400-144584800 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
