Variant report

Variant	rs2385520
Chromosome Location	chr8:124859289-124859290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12155526	0.83[ASN][1000 genomes]
rs1367827	0.90[ASN][1000 genomes]
rs1431670	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1431671	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1594501	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1821116	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2116357	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2116358	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2385518	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2385519	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2385521	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4870869	0.87[ASN][1000 genomes]
rs6470190	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6470191	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6987803	0.90[ASN][1000 genomes]
rs7004647	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7014235	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv6374	chr8:124854157-124899409	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124857400-124863600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:124857600-124860200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:124857600-124860400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:124857600-124860400	Weak transcription	HMEC	breast
5	chr8:124857600-124860400	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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