Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12155526	0.88[ASN][1000 genomes]
rs1367827	1.00[ASN][1000 genomes]
rs1431670	1.00[ASN][1000 genomes]
rs1431671	1.00[ASN][1000 genomes]
rs1594501	1.00[ASN][1000 genomes]
rs1821116	1.00[ASN][1000 genomes]
rs2116357	0.98[ASN][1000 genomes]
rs2116358	0.95[ASN][1000 genomes]
rs2385518	0.98[ASN][1000 genomes]
rs2385519	0.93[ASN][1000 genomes]
rs2385520	0.90[ASN][1000 genomes]
rs2385521	0.96[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs4870869	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470186	0.82[CHB][hapmap]
rs6470190	0.99[ASN][1000 genomes]
rs6470191	0.99[ASN][1000 genomes]
rs7004647	0.98[ASN][1000 genomes]
rs7014235	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715072	0.80[ASN][1000 genomes]
rs9297675	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv6374	chr8:124854157-124899409	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv523612	chr8:124855776-124857300	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124856600-124857400	Enhancers	Small Intestine	intestine
2	chr8:124856600-124857600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:124856600-124857600	Enhancers	HMEC	breast
4	chr8:124856600-124857600	Enhancers	NHEK	skin
5	chr8:124856800-124857600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:124856800-124857600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:124857000-124857200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: