Variant report

Variant	rs2389138
Chromosome Location	chr13:95174478-95174479
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs1408995	0.89[ASN][1000 genomes]
rs17181801	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17181808	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1886787	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1886789	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1891099	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1891100	0.90[ASN][1000 genomes]
rs2389132	0.92[ASN][1000 genomes]
rs2389133	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2389134	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2389135	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2389137	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389139	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2892688	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34536649	0.92[ASN][1000 genomes]
rs35570210	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4142020	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4142021	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4411370	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4442657	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4553470	0.93[ASN][1000 genomes]
rs6492711	0.93[ASN][1000 genomes]
rs6492714	0.83[ASN][1000 genomes]
rs71272206	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs717769	0.93[ASN][1000 genomes]
rs7317805	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7318895	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7322490	0.80[AMR][1000 genomes]
rs7323407	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7325171	0.96[ASN][1000 genomes]
rs7326382	0.90[ASN][1000 genomes]
rs7327906	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7329277	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7330052	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7330757	0.99[ASN][1000 genomes]
rs7334113	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7334290	0.93[ASN][1000 genomes]
rs7334716	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7334829	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7335126	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7336995	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7336997	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7337026	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7337275	0.97[ASN][1000 genomes]
rs7338715	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7338730	0.93[ASN][1000 genomes]
rs7490774	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7492025	0.89[ASN][1000 genomes]
rs767925	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7997227	0.89[ASN][1000 genomes]
rs7998655	0.93[ASN][1000 genomes]
rs8002991	0.93[ASN][1000 genomes]
rs9284279	0.93[ASN][1000 genomes]
rs9301971	0.93[ASN][1000 genomes]
rs9301972	0.96[ASN][1000 genomes]
rs9301973	0.93[ASN][1000 genomes]
rs9301974	0.93[ASN][1000 genomes]
rs9301975	0.89[ASN][1000 genomes]
rs9556376	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9556377	0.92[ASN][1000 genomes]
rs9556378	0.92[ASN][1000 genomes]
rs9556379	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9556380	0.91[ASN][1000 genomes]
rs9556381	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9556382	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9556383	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9556384	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9556386	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9556387	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9556388	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9556390	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556391	0.97[ASN][1000 genomes]
rs9556392	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556397	0.93[ASN][1000 genomes]
rs9556398	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561568	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9561569	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9561570	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9561571	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9561572	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9561573	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9561574	0.92[ASN][1000 genomes]
rs9561575	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9561576	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9561577	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9561578	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561579	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9561580	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561581	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561582	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561583	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561584	0.93[ASN][1000 genomes]
rs9561588	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561589	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9561591	0.96[ASN][1000 genomes]
rs9561592	0.96[ASN][1000 genomes]
rs9561593	0.96[ASN][1000 genomes]
rs9561595	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561596	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561597	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561599	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561600	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561601	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561603	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561604	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561606	0.99[ASN][1000 genomes]
rs9561619	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561620	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561621	0.93[ASN][1000 genomes]
rs9561622	0.90[ASN][1000 genomes]
rs9561623	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561625	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9561626	0.86[ASN][1000 genomes]
rs9590029	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9590030	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2389138	DCT	cis	Artery Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95173400-95176600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:95173400-95176800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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