Variant report

Variant	rs7492025
Chromosome Location	chr13:95202113-95202114
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:95201752..95203295-chr13:95205384..95208174,2	MCF-7	breast:
2	chr13:95188685..95191659-chr13:95200343..95202520,3	K562	blood:
3	chr13:95201799..95202349-chr18:657540..658064,2	Hela-S3	cervix:
4	chr13:95200950..95203234-chr13:95251840..95253410,2	MCF-7	breast:
5	chr13:95201398..95202439-chr15:65596701..65597343,3	Hela-S3	cervix:
6	chr13:95200940..95202785-chr13:95248237..95249753,2	MCF-7	breast:
7	chr13:95201567..95202379-chr13:95248193..95248915,2	MCF-7	breast:
8	chr13:95189667..95191173-chr13:95200672..95202782,2	MCF-7	breast:
9	chr13:95201617..95204136-chr13:95207958..95210665,2	K562	blood:
10	chr13:95200681..95202256-chr13:95253004..95255314,2	K562	blood:
11	chr13:95201512..95205109-chr13:95210516..95214213,3	MCF-7	breast:
12	chr13:95200681..95202448-chr13:95253004..95255779,2	K562	blood:
13	chr13:95201188..95204136-chr13:95209165..95210804,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000200156	Chromatin interaction
ENSG00000176890	Chromatin interaction
ENSG00000088451	Chromatin interaction
ENSG00000152749	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1408995	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17181801	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17181808	0.91[ASN][1000 genomes]
rs1886787	0.87[ASN][1000 genomes]
rs1886789	0.87[ASN][1000 genomes]
rs1891099	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1891100	0.98[ASN][1000 genomes]
rs2389132	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2389133	0.87[ASN][1000 genomes]
rs2389134	0.88[ASN][1000 genomes]
rs2389135	0.92[ASN][1000 genomes]
rs2389137	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2389138	0.89[ASN][1000 genomes]
rs2389139	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2892688	0.92[ASN][1000 genomes]
rs34536649	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35570210	0.85[ASN][1000 genomes]
rs4142020	0.92[ASN][1000 genomes]
rs4142021	0.92[ASN][1000 genomes]
rs4411370	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4442657	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4553470	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6492711	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6492714	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs717769	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7317805	0.91[ASN][1000 genomes]
rs7318895	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7323407	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7325171	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7326382	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7327906	0.91[ASN][1000 genomes]
rs7329277	0.88[ASN][1000 genomes]
rs7330052	0.88[ASN][1000 genomes]
rs7330757	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7334113	0.88[ASN][1000 genomes]
rs7334290	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7334716	0.88[ASN][1000 genomes]
rs7334829	0.88[ASN][1000 genomes]
rs7335126	0.88[ASN][1000 genomes]
rs7336995	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7336997	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7337026	0.88[ASN][1000 genomes]
rs7337275	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7338715	0.91[ASN][1000 genomes]
rs7338730	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7490774	0.88[ASN][1000 genomes]
rs767925	0.92[ASN][1000 genomes]
rs7997227	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7998655	0.86[ASN][1000 genomes]
rs8002991	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9284279	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9301971	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9301972	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9301973	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9301974	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9301975	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556376	0.87[ASN][1000 genomes]
rs9556377	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9556378	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9556379	0.87[ASN][1000 genomes]
rs9556380	0.86[ASN][1000 genomes]
rs9556381	0.87[ASN][1000 genomes]
rs9556382	0.87[ASN][1000 genomes]
rs9556383	0.87[ASN][1000 genomes]
rs9556384	0.87[ASN][1000 genomes]
rs9556386	0.88[ASN][1000 genomes]
rs9556387	0.88[ASN][1000 genomes]
rs9556388	0.88[ASN][1000 genomes]
rs9556390	0.91[ASN][1000 genomes]
rs9556391	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9556392	0.91[ASN][1000 genomes]
rs9556397	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556398	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561568	0.87[ASN][1000 genomes]
rs9561569	0.87[ASN][1000 genomes]
rs9561570	0.87[ASN][1000 genomes]
rs9561571	0.87[ASN][1000 genomes]
rs9561572	0.87[ASN][1000 genomes]
rs9561573	0.87[ASN][1000 genomes]
rs9561574	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9561575	0.87[ASN][1000 genomes]
rs9561576	0.87[ASN][1000 genomes]
rs9561577	0.87[ASN][1000 genomes]
rs9561578	0.88[ASN][1000 genomes]
rs9561579	0.87[ASN][1000 genomes]
rs9561580	0.88[ASN][1000 genomes]
rs9561581	0.88[ASN][1000 genomes]
rs9561582	0.88[ASN][1000 genomes]
rs9561583	0.88[ASN][1000 genomes]
rs9561584	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9561588	0.88[ASN][1000 genomes]
rs9561589	0.90[ASN][1000 genomes]
rs9561591	0.91[ASN][1000 genomes]
rs9561592	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9561593	0.91[ASN][1000 genomes]
rs9561595	0.91[ASN][1000 genomes]
rs9561596	0.91[ASN][1000 genomes]
rs9561597	0.91[ASN][1000 genomes]
rs9561599	0.92[ASN][1000 genomes]
rs9561600	0.92[ASN][1000 genomes]
rs9561601	0.92[ASN][1000 genomes]
rs9561602	0.92[ASN][1000 genomes]
rs9561603	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9561604	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9561605	0.88[ASN][1000 genomes]
rs9561606	0.88[ASN][1000 genomes]
rs9561619	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9561620	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561621	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561622	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9561623	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9561625	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561626	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9590029	0.92[ASN][1000 genomes]
rs9590030	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv562756	chr13:95178317-95238154	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95200400-95202200	Flanking Active TSS	Dnd41	blood
2	chr13:95200400-95202400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr13:95200400-95203000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:95200400-95203000	Active TSS	Fetal Kidney	kidney
5	chr13:95200400-95203000	Active TSS	Right Ventricle	heart
6	chr13:95200400-95203200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:95200600-95202400	Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr13:95200600-95202800	Active TSS	Brain Cingulate Gyrus	brain
9	chr13:95200600-95203000	Active TSS	H9 Cell Line	embryonic stem cell
10	chr13:95200600-95203000	Active TSS	Fetal Brain Female	brain
11	chr13:95200600-95203000	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr13:95200800-95202400	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr13:95200800-95202600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:95200800-95202600	Active TSS	Aorta	Aorta
15	chr13:95200800-95202600	Active TSS	A549	lung
16	chr13:95200800-95202600	Active TSS	K562	blood
17	chr13:95200800-95202600	Active TSS	NHDF-Ad	bronchial
18	chr13:95200800-95202800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr13:95200800-95202800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr13:95200800-95202800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr13:95200800-95202800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
22	chr13:95200800-95202800	Active TSS	Ovary	ovary
23	chr13:95200800-95202800	Active TSS	Psoas Muscle	Psoas
24	chr13:95200800-95203000	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr13:95201000-95202200	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
26	chr13:95201000-95202200	Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr13:95201000-95202400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
28	chr13:95201000-95202400	Bivalent/Poised TSS	HepG2	liver
29	chr13:95201000-95202600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr13:95201000-95202600	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr13:95201000-95202600	Active TSS	Muscle Satellite Cultured Cells	--
32	chr13:95201000-95202600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr13:95201000-95202600	Active TSS	Colon Smooth Muscle	Colon
34	chr13:95201000-95202600	Active TSS	Gastric	stomach
35	chr13:95201000-95202600	Active TSS	Lung	lung
36	chr13:95201000-95202600	Active TSS	Pancreas	Pancrea
37	chr13:95201000-95202600	Active TSS	Rectal Smooth Muscle	rectum
38	chr13:95201000-95202600	Active TSS	Sigmoid Colon	Sigmoid Colon
39	chr13:95201000-95202600	Active TSS	Small Intestine	intestine
40	chr13:95201000-95202600	Active TSS	Spleen	Spleen
41	chr13:95201000-95202800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
42	chr13:95201000-95202800	Active TSS	iPS-15b Cell Line	embryonic stem cell
43	chr13:95201000-95202800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr13:95201000-95202800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr13:95201000-95202800	Active TSS	Primary T cells from cord blood	blood
46	chr13:95201000-95202800	Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr13:95201000-95202800	Active TSS	Brain Angular Gyrus	brain
48	chr13:95201000-95202800	Active TSS	Fetal Intestine Large	intestine
49	chr13:95201000-95202800	Active TSS	Left Ventricle	heart
50	chr13:95201000-95202800	Active TSS	Right Atrium	heart

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