Variant report

Variant	rs9556390
Chromosome Location	chr13:95168030-95168031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95165821..95169962-chr13:95170967..95173736,3	K562	blood:

Extended variants
information (count: 119 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs1408995	0.91[ASN][1000 genomes]
rs17181801	0.95[ASN][1000 genomes]
rs17181808	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1886787	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1886789	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1891099	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1891100	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2389132	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2389133	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2389134	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2389135	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2389137	0.96[ASN][1000 genomes]
rs2389138	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2389139	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2892688	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34536649	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35570210	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4142020	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4142021	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4411370	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4442657	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4553470	0.95[ASN][1000 genomes]
rs6492711	0.96[ASN][1000 genomes]
rs6492714	0.85[ASN][1000 genomes]
rs71272206	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs717769	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7317805	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318895	0.96[ASN][1000 genomes]
rs7322490	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7323407	0.96[ASN][1000 genomes]
rs7325171	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326382	0.92[ASN][1000 genomes]
rs7327906	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7329277	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7330052	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7330757	0.95[ASN][1000 genomes]
rs7334113	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7334290	0.95[ASN][1000 genomes]
rs7334716	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7334829	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7335126	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7336995	0.96[ASN][1000 genomes]
rs7336997	0.96[ASN][1000 genomes]
rs7337026	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7337275	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7338715	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7338730	0.96[ASN][1000 genomes]
rs7490774	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7492025	0.91[ASN][1000 genomes]
rs767925	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7997227	0.91[ASN][1000 genomes]
rs7998655	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8002991	0.96[ASN][1000 genomes]
rs9284279	0.96[ASN][1000 genomes]
rs9301971	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9301972	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301973	0.96[ASN][1000 genomes]
rs9301974	0.96[ASN][1000 genomes]
rs9301975	0.91[ASN][1000 genomes]
rs9556376	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556377	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556378	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556379	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556380	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556381	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556382	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556383	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556384	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556386	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556387	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556388	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556391	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556392	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556397	0.96[ASN][1000 genomes]
rs9556398	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561568	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561569	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561570	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561571	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561572	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561573	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561574	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561575	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561576	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561577	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561578	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561579	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561580	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561581	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561582	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561583	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561584	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561586	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9561588	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561589	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561591	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561592	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561593	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561595	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561596	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561597	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561599	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561600	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561601	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561602	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561603	0.96[ASN][1000 genomes]
rs9561604	0.96[ASN][1000 genomes]
rs9561605	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561606	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9561619	0.96[ASN][1000 genomes]
rs9561620	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561621	0.96[ASN][1000 genomes]
rs9561622	0.92[ASN][1000 genomes]
rs9561623	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9561625	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9561626	0.88[ASN][1000 genomes]
rs9590029	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9590030	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs9556390	DCT	cis	brain	BrainEAC
rs9556390	DCT	cis	frontal cortex	BrainEAC
rs9556390	DCT	cis	occipital cortex	BrainEAC
rs9556390	DCT	cis	thalamus	BrainEAC
rs9556390	DCT	cis	temporal cortex	BrainEAC

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95166000-95168600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:95166400-95168600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:95166800-95168200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr13:95167000-95168600	Enhancers	Thymus	Thymus
5	chr13:95167000-95170200	Weak transcription	Aorta	Aorta
6	chr13:95167400-95168200	Enhancers	Dnd41	blood
7	chr13:95167800-95168600	Enhancers	Fetal Thymus	thymus
8	chr13:95168000-95168200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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