Variant report

Variant	rs2389652
Chromosome Location	chr1:84251434-84251435
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10159391	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11163825	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1546921	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17129520	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6576943	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6576946	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6576947	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6699405	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7552393	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs761405	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs997248	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84245200-84252200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:84245200-84252200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:84245200-84253400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:84248200-84252600	Weak transcription	Liver	Liver
5	chr1:84251400-84252600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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