Variant report

Variant	rs997248
Chromosome Location	chr1:84230245-84230246
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10159391	0.87[EUR][1000 genomes]
rs11163825	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1546921	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17129520	0.87[EUR][1000 genomes]
rs2389652	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6576943	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6576946	0.87[EUR][1000 genomes]
rs6576947	0.87[EUR][1000 genomes]
rs6699405	0.89[CEU][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs7552393	0.83[CEU][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs761405	0.85[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84224800-84230600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:84225000-84230400	Enhancers	Primary B cells from cord blood	blood
3	chr1:84226800-84230400	Enhancers	Fetal Lung	lung
4	chr1:84227800-84234600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr1:84228400-84235400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:84229000-84230400	Enhancers	Fetal Kidney	kidney
7	chr1:84229200-84230400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:84229200-84230600	Weak transcription	Adipose Nuclei	Adipose
9	chr1:84229200-84231000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:84229600-84231200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:84229600-84231400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:84229800-84230800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr1:84230000-84230400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:84230000-84230400	Enhancers	Brain Germinal Matrix	brain
15	chr1:84230000-84230600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:84230000-84230600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:84230000-84231000	Enhancers	Liver	Liver
18	chr1:84230000-84231200	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr1:84230000-84232000	Weak transcription	Fetal Intestine Small	intestine
20	chr1:84230000-84232200	Enhancers	HepG2	liver
21	chr1:84230200-84230400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr1:84230200-84230400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr1:84230200-84230400	Enhancers	Fetal Brain Male	brain

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