Variant report

Variant	rs2391575
Chromosome Location	chr4:130880236-130880237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1507780	0.94[EUR][1000 genomes]
rs1507781	0.86[EUR][1000 genomes]
rs1995718	0.86[EUR][1000 genomes]
rs1995719	0.94[EUR][1000 genomes]
rs1995720	0.94[EUR][1000 genomes]
rs1995721	0.86[EUR][1000 genomes]
rs2940263	0.86[EUR][1000 genomes]
rs2940264	0.94[EUR][1000 genomes]
rs2940266	0.86[EUR][1000 genomes]
rs2940280	0.93[EUR][1000 genomes]
rs2968922	0.86[EUR][1000 genomes]
rs2968941	0.86[EUR][1000 genomes]
rs2968984	0.85[EUR][1000 genomes]
rs2968985	0.93[EUR][1000 genomes]
rs2968986	0.94[EUR][1000 genomes]
rs2968987	0.86[EUR][1000 genomes]
rs4864255	0.94[EUR][1000 genomes]
rs60531364	0.81[EUR][1000 genomes]
rs6833366	0.94[EUR][1000 genomes]
rs7654798	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019516	chr4:130754819-130976202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2752386	chr4:130849395-130896395	Active TSS Enhancers Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
3	nsv1017270	chr4:130853337-130982586	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130879800-130882200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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