Variant report

Variant	rs2968922
Chromosome Location	chr4:130892393-130892394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1507780	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1507781	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1995718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1995719	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1995720	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1995721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2391515	0.89[YRI][hapmap]
rs2391575	0.86[EUR][1000 genomes]
rs2940263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2940264	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2940266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2940267	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2940268	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2940280	0.91[EUR][1000 genomes]
rs2968941	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2968984	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2968985	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2968986	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2968987	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4864255	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6832154	0.81[EUR][1000 genomes]
rs6833366	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7654798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019516	chr4:130754819-130976202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2752386	chr4:130849395-130896395	Active TSS Enhancers Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
3	nsv1017270	chr4:130853337-130982586	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130891800-130892800	Weak transcription	Brain Germinal Matrix	brain
2	chr4:130892000-130892800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr4:130892200-130892800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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