Variant report

Variant	rs2391801
Chromosome Location	chr13:110683216-110683217
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2152431	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4771658	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4773109	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4773110	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6650274	1.00[EUR][1000 genomes]
rs7984137	0.93[ASN][1000 genomes]
rs7986126	0.85[AFR][1000 genomes]
rs7994777	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7998044	0.84[AFR][1000 genomes]
rs7999401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110675400-110683600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:110676200-110686200	Weak transcription	Aorta	Aorta
3	chr13:110677000-110684800	Weak transcription	Brain Substantia Nigra	brain
4	chr13:110678400-110690600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:110680600-110688600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:110682200-110694600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr13:110682600-110683400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr13:110682600-110684000	Strong transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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