Variant report

Variant	rs4773110
Chromosome Location	chr13:110671395-110671396
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2391801	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4771658	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4773109	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57376479	0.87[ASN][1000 genomes]
rs7984137	0.87[ASN][1000 genomes]
rs7994777	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7998044	0.85[AFR][1000 genomes]
rs7999401	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv901004	chr13:110653666-110682916	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110668200-110673400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr13:110669200-110671600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:110670600-110675000	Weak transcription	Left Ventricle	heart
4	chr13:110670600-110675600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:110670600-110675600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:110670800-110675800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:110670800-110675800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr13:110670800-110676000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:110670800-110676000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:110671000-110672800	Weak transcription	NHLF	lung
11	chr13:110671000-110674800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:110671000-110676200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr13:110671000-110676200	Weak transcription	Osteobl	bone
14	chr13:110671000-110676400	Weak transcription	NH-A	brain
15	chr13:110671200-110674400	Weak transcription	HMEC	breast
16	chr13:110671200-110676000	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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