Variant report

Variant	rs7994777
Chromosome Location	chr13:110677189-110677190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2152431	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2391801	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4771658	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4773109	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4773110	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6650274	1.00[EUR][1000 genomes]
rs7984137	0.93[ASN][1000 genomes]
rs7986126	0.97[AFR][1000 genomes]
rs7999401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv901004	chr13:110653666-110682916	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110675400-110677400	Enhancers	Fetal Heart	heart
2	chr13:110675400-110683600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:110675600-110677200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:110675600-110677200	Enhancers	Rectal Smooth Muscle	rectum
5	chr13:110675600-110677400	Enhancers	Colon Smooth Muscle	Colon
6	chr13:110676000-110677200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr13:110676000-110677200	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr13:110676200-110686200	Weak transcription	Aorta	Aorta
9	chr13:110676400-110677200	Enhancers	Stomach Smooth Muscle	stomach
10	chr13:110676800-110677200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr13:110676800-110677800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr13:110677000-110677200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr13:110677000-110679000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr13:110677000-110682600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr13:110677000-110684800	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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