Variant report

Variant	rs2393949
Chromosome Location	chr10:44014299-44014300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11238575	1.00[CHB][hapmap]
rs11238595	1.00[CHB][hapmap]
rs17153601	1.00[CHB][hapmap]
rs17366781	1.00[CHB][hapmap]
rs2261637	1.00[CHB][hapmap]
rs2265955	1.00[CHB][hapmap]
rs2819025	1.00[CHB][hapmap]
rs2999237	1.00[CHB][hapmap]
rs2999238	1.00[CHB][hapmap]
rs2999290	1.00[CHB][hapmap]
rs3006382	1.00[CHB][hapmap]
rs3006389	1.00[CHB][hapmap]
rs4948727	1.00[CHB][hapmap]
rs7068859	1.00[CHB][hapmap]
rs7069748	1.00[CHB][hapmap]
rs7075288	1.00[CHB][hapmap]
rs7084621	1.00[CHB][hapmap]
rs7478426	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051325	chr10:43988273-44022473	ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv275081	chr10:43996713-44018932	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2393949	RP11-517P14.2	cis	Muscle Skeletal	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44012800-44021800	ZNF genes & repeats	Liver	Liver
2	chr10:44013000-44022600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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