Variant report

Variant	rs7069748
Chromosome Location	chr10:44112763-44112764
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44111828..44115534-chr10:44118358..44120756,4	K562	blood:
2	chr10:44101159..44103398-chr10:44111501..44113030,2	MCF-7	breast:
3	chr10:44112275..44114804-chr10:44137796..44140569,2	K562	blood:

Variant related genes	Relation type
ENSG00000226245	Chromatin interaction
ENSG00000198298	Chromatin interaction
ENSG00000232004	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11238575	1.00[CHB][hapmap]
rs11238595	1.00[CHB][hapmap]
rs2261637	1.00[CHB][hapmap]
rs2265955	1.00[CHB][hapmap]
rs2393949	1.00[CHB][hapmap]
rs2819025	1.00[CHB][hapmap]
rs2999237	1.00[CHB][hapmap]
rs2999238	1.00[CHB][hapmap]
rs2999290	1.00[CHB][hapmap]
rs3006382	1.00[CHB][hapmap]
rs3006389	1.00[CHB][hapmap]
rs4948727	1.00[CHB][hapmap]
rs7068859	1.00[CHB][hapmap]
rs7075288	1.00[CHB][hapmap]
rs7084621	1.00[CHB][hapmap]
rs74138194	1.00[ASN][1000 genomes]
rs74138197	1.00[ASN][1000 genomes]
rs7478426	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906632	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522992	chr10:44110341-44114384	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44102800-44118800	Weak transcription	Fetal Heart	heart
2	chr10:44106000-44114200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:44106200-44113400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
4	chr10:44106200-44113600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:44107800-44113800	ZNF genes & repeats	Liver	Liver
6	chr10:44108600-44113000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr10:44108600-44113000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:44108600-44113200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:44108600-44113400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
10	chr10:44108800-44113000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:44108800-44113400	ZNF genes & repeats	Fetal Intestine Small	intestine
12	chr10:44108800-44113600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr10:44109000-44112800	ZNF genes & repeats	Primary T cells from cord blood	blood
14	chr10:44109000-44112800	ZNF genes & repeats	K562	blood
15	chr10:44109000-44113200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:44109000-44113600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr10:44109200-44112800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:44109200-44113400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
19	chr10:44109400-44113000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:44109400-44113200	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:44109600-44113000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
22	chr10:44109600-44113200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:44109600-44113600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:44109800-44112800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
25	chr10:44109800-44113400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:44109800-44113600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
27	chr10:44109800-44113600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
28	chr10:44109800-44113600	ZNF genes & repeats	Dnd41	blood
29	chr10:44109800-44113600	ZNF genes & repeats	HSMM	muscle
30	chr10:44109800-44113800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:44110200-44113000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
32	chr10:44110200-44113400	ZNF genes & repeats	Primary B cells from cord blood	blood
33	chr10:44110200-44113600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
34	chr10:44110400-44112800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
35	chr10:44110400-44113000	ZNF genes & repeats	Osteobl	bone
36	chr10:44110400-44113200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:44110600-44112800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
38	chr10:44111000-44112800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
39	chr10:44111000-44112800	ZNF genes & repeats	Fetal Intestine Large	intestine
40	chr10:44111000-44113000	ZNF genes & repeats	HSMMtube	muscle
41	chr10:44111000-44113400	ZNF genes & repeats	Adipose Nuclei	Adipose
42	chr10:44111200-44112800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
43	chr10:44111200-44113000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
44	chr10:44111200-44113200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:44111200-44113400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
46	chr10:44111200-44113400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
47	chr10:44111200-44113400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:44111200-44113600	ZNF genes & repeats	Fetal Brain Female	brain
49	chr10:44111400-44112800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:44111400-44112800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood

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