Variant report

Variant	rs74138194
Chromosome Location	chr10:44139122-44139123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr10:44138660-44140463	K562	blood:	n/a	n/a
2	SETDB1	chr10:44138626-44140908	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44068167..44069924-chr10:44136851..44139304,2	MCF-7	breast:
2	chr10:44132457..44135103-chr10:44137604..44139147,2	MCF-7	breast:

Variant related genes	Relation type
ZNF32-AS1	TF binding region
ZNF32-AS2	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs7069748	1.00[ASN][1000 genomes]
rs74138197	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7478426	1.00[ASN][1000 genomes]
rs7906632	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2437420	chr10:44137856-44139392	ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44135600-44142800	ZNF genes & repeats	Fetal Brain Female	brain
2	chr10:44136800-44141600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
3	chr10:44136800-44142000	ZNF genes & repeats	Brain Germinal Matrix	brain
4	chr10:44136800-44142000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
5	chr10:44136800-44142200	ZNF genes & repeats	Brain Hippocampus Middle	brain
6	chr10:44136800-44142200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
7	chr10:44136800-44142400	ZNF genes & repeats	Liver	Liver
8	chr10:44136800-44142400	ZNF genes & repeats	HSMM	muscle
9	chr10:44136800-44143400	ZNF genes & repeats	Fetal Lung	lung
10	chr10:44137000-44139400	Weak transcription	Stomach Mucosa	stomach
11	chr10:44137000-44142000	ZNF genes & repeats	Brain Substantia Nigra	brain
12	chr10:44137000-44143000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
13	chr10:44137000-44143400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr10:44137000-44143600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:44137200-44141600	ZNF genes & repeats	Brain Angular Gyrus	brain
16	chr10:44137200-44142000	ZNF genes & repeats	Primary B cells from cord blood	blood
17	chr10:44137200-44142200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
18	chr10:44137200-44142800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:44137200-44143200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:44137200-44143200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:44137200-44143400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
22	chr10:44137400-44142200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
23	chr10:44137400-44142200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:44137400-44142200	ZNF genes & repeats	Brain Anterior Caudate	brain
25	chr10:44137400-44142400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
26	chr10:44137400-44142600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
27	chr10:44137400-44143200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
28	chr10:44137400-44143200	ZNF genes & repeats	Fetal Kidney	kidney
29	chr10:44137400-44143400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:44137600-44142000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
31	chr10:44137600-44142200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:44137600-44142400	ZNF genes & repeats	Adipose Nuclei	Adipose
33	chr10:44137600-44142800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
34	chr10:44137600-44143200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:44137600-44143400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
36	chr10:44137800-44141800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:44137800-44142000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:44137800-44142000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:44137800-44142200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
40	chr10:44137800-44142200	ZNF genes & repeats	Psoas Muscle	Psoas
41	chr10:44137800-44142400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:44137800-44142400	ZNF genes & repeats	Ovary	ovary
43	chr10:44137800-44142600	ZNF genes & repeats	Colon Smooth Muscle	Colon
44	chr10:44137800-44142600	ZNF genes & repeats	Fetal Intestine Large	intestine
45	chr10:44137800-44142800	ZNF genes & repeats	Fetal Muscle Leg	muscle
46	chr10:44137800-44143200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
47	chr10:44137800-44143200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:44137800-44143600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:44137800-44143800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:44137800-44143800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung

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