Variant report

Variant	rs74138197
Chromosome Location	chr10:44143626-44143627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr10:44143472-44144790	K562	blood:	n/a	chr10:44143927-44143937 chr10:44143979-44143989
2	MAX	chr10:44143600-44144979	MCF-7	breast:	n/a	chr10:44143927-44143937 chr10:44143979-44143989
3	RCOR1	chr10:44143576-44144757	K562	blood:	n/a	n/a
4	CTCF	chr10:44143580-44143730	HMF	breast:	n/a	chr10:44143698-44143716
5	SREBP1	chr10:44143073-44144967	GM12878	blood:	n/a	n/a
6	MAX	chr10:44143624-44144910	K562	blood:	n/a	chr10:44143927-44143937 chr10:44143979-44143989
7	RUNX3	chr10:44143544-44144545	GM12878	blood:	n/a	chr10:44143782-44143799
8	E2F6	chr10:44143584-44144937	H1-hESC	embryonic stem cell:	n/a	chr10:44144304-44144313 chr10:44144307-44144317 chr10:44144306-44144316
9	POLR2A	chr10:44143436-44143707	HepG2	liver:	n/a	n/a
10	POLR2A	chr10:44143597-44143658	GM12878	blood:	n/a	n/a
11	RUNX3	chr10:44143548-44144464	GM12878	blood:	n/a	chr10:44143782-44143799
12	MAX	chr10:44143618-44144603	NB4	blood:	n/a	chr10:44143927-44143937 chr10:44143979-44143989
13	RCOR1	chr10:44143595-44144823	K562	blood:	n/a	n/a
14	MAX	chr10:44143549-44144925	H1-hESC	embryonic stem cell:	n/a	chr10:44143927-44143937 chr10:44143979-44143989
15	E2F6	chr10:44143593-44144946	H1-hESC	embryonic stem cell:	n/a	chr10:44144304-44144313 chr10:44144307-44144317 chr10:44144306-44144316
16	ZNF143	chr10:44143456-44144922	K562	blood:	n/a	chr10:44144406-44144415 chr10:44144307-44144317 chr10:44144399-44144417 chr10:44144327-44144336 chr10:44144306-44144316 chr10:44144408-44144417 chr10:44144301-44144311 chr10:44143924-44143942 chr10:44144325-44144343 chr10:44143930-44143948 chr10:44144325-44144334
17	ELF1	chr10:44143590-44144744	GM12878	blood:	n/a	chr10:44144283-44144295 chr10:44144530-44144542
18	ELF1	chr10:44143607-44144112	K562	blood:	n/a	n/a
19	GTF2F1	chr10:44143613-44144585	K562	blood:	n/a	n/a
20	REST	chr10:44143428-44144937	H1-neurons	neurons:	n/a	chr10:44144175-44144188
21	CTCF	chr10:44143580-44143730	HPAF	blood vessel:	n/a	chr10:44143698-44143716
22	POLR2A	chr10:44143562-44144594	K562	blood:	n/a	n/a
23	POLR2A	chr10:44143560-44144506	HepG2	liver:	n/a	n/a
24	CBX3	chr10:44143533-44144009	K562	blood:	n/a	n/a
25	SETDB1	chr10:44142946-44144804	U2OS	brain:	n/a	chr10:44144323-44144347 chr10:44144298-44144307 chr10:44144304-44144313 chr10:44144395-44144419
26	UBTF	chr10:44143604-44144754	K562	blood:	n/a	n/a
27	POLR2A	chr10:44143330-44144616	H1-hESC	embryonic stem cell:	n/a	n/a
28	POLR2A	chr10:44143589-44143648	MCF-7	breast:	n/a	n/a
29	UBTF	chr10:44143548-44144653	K562	blood:	n/a	n/a
30	MAX	chr10:44143583-44144949	A549	lung:	n/a	chr10:44143927-44143937 chr10:44143979-44143989
31	MAX	chr10:44143596-44144972	H1-hESC	embryonic stem cell:	n/a	chr10:44143927-44143937 chr10:44143979-44143989
32	HCFC1	chr10:44143556-44144829	K562	blood:	n/a	n/a
33	ZNF263	chr10:44143593-44144811	HEK293-T-REx	kidney:	n/a	n/a
34	E2F6	chr10:44143588-44144876	K562	blood:	n/a	chr10:44144304-44144313 chr10:44144307-44144317 chr10:44144306-44144316

No.	Distal block	Cell Line	Cell type
1	chr10:44101689..44104570-chr10:44142385..44144867,2	K562	blood:
2	chr10:44125188..44126781-chr10:44143124..44145486,2	K562	blood:
3	chr10:44140472..44142370-chr10:44143162..44146127,2	MCF-7	breast:
4	chr10:44100612..44103408-chr10:44143126..44145241,3	MCF-7	breast:
5	chr10:43915151..43917098-chr10:44141914..44144023,2	MCF-7	breast:
6	chr10:44121619..44124737-chr10:44140995..44143935,3	K562	blood:
7	chr10:44123689..44125547-chr10:44142014..44144149,2	MCF-7	breast:

Variant related genes	Relation type
ZNF32	TF binding region
ENSG00000232004	Chromatin interaction
ENSG00000230565	Chromatin interaction
ENSG00000223910	Chromatin interaction
ENSG00000230555	Chromatin interaction
ENSG00000238263	Chromatin interaction
ENSG00000169740	Chromatin interaction
ENSG00000198298	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs7069748	1.00[ASN][1000 genomes]
rs74138194	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7478426	1.00[ASN][1000 genomes]
rs7906632	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44137800-44143800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:44137800-44143800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:44139400-44143800	ZNF genes & repeats	Fetal Intestine Small	intestine
4	chr10:44142800-44145000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:44143000-44143800	Flanking Active TSS	Primary T cells from cord blood	blood
6	chr10:44143000-44143800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr10:44143000-44144800	Active TSS	Rectal Smooth Muscle	rectum
8	chr10:44143200-44143800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
9	chr10:44143200-44143800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:44143200-44143800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr10:44143200-44143800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr10:44143200-44143800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr10:44143200-44143800	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr10:44143200-44143800	Flanking Active TSS	Liver	Liver
15	chr10:44143200-44143800	Flanking Active TSS	Brain Cingulate Gyrus	brain
16	chr10:44143200-44143800	Active TSS	Brain Germinal Matrix	brain
17	chr10:44143200-44143800	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr10:44143200-44143800	Flanking Active TSS	Fetal Brain Male	brain
19	chr10:44143200-44143800	Flanking Active TSS	Fetal Muscle Leg	muscle
20	chr10:44143200-44143800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
21	chr10:44143200-44143800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr10:44143200-44144000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr10:44143200-44144600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
24	chr10:44143200-44144600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:44143200-44144800	Active TSS	HSMMtube	muscle
26	chr10:44143200-44145000	Active TSS	Fetal Kidney	kidney
27	chr10:44143200-44145000	Active TSS	HSMM	muscle
28	chr10:44143200-44145000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr10:44143200-44145000	Active TSS	Osteobl	bone
30	chr10:44143400-44143800	Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr10:44143400-44143800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:44143400-44143800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
33	chr10:44143400-44143800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:44143400-44143800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr10:44143400-44143800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:44143400-44143800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr10:44143400-44143800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:44143400-44143800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
39	chr10:44143400-44143800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:44143400-44143800	Flanking Active TSS	Fetal Thymus	thymus
41	chr10:44143400-44143800	Flanking Active TSS	Left Ventricle	heart
42	chr10:44143400-44143800	Flanking Active TSS	Right Ventricle	heart
43	chr10:44143400-44143800	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr10:44143400-44143800	Flanking Active TSS	K562	blood
45	chr10:44143400-44143800	Flanking Active TSS	NHEK	skin
46	chr10:44143400-44144000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:44143400-44144000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:44143400-44144000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:44143400-44144000	Flanking Active TSS	Dnd41	blood
50	chr10:44143400-44144400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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