Variant report

Variant	rs3006382
Chromosome Location	chr10:44048470-44048471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44047431..44049716-chr10:44053122..44055103,2	K562	blood:
2	chr10:44048373..44055141-chr10:44068006..44071269,9	K562	blood:
3	chr10:44047726..44051764-chr10:44138439..44140975,3	K562	blood:
4	chr10:44047252..44049583-chr10:44114219..44116060,2	K562	blood:

Variant related genes	Relation type
ENSG00000196793	Chromatin interaction
ENSG00000226245	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11238575	1.00[CHB][hapmap]
rs11238595	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs1338567	1.00[ASN][1000 genomes]
rs1338568	1.00[ASN][1000 genomes]
rs1338569	1.00[ASN][1000 genomes]
rs1361227	1.00[ASN][1000 genomes]
rs1361228	1.00[ASN][1000 genomes]
rs17153601	1.00[CHB][hapmap]
rs17154024	0.84[CEU][hapmap]
rs17366781	1.00[CHB][hapmap]
rs1832466	1.00[ASN][1000 genomes]
rs1832472	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2261637	1.00[CHB][hapmap]
rs2393949	1.00[CHB][hapmap]
rs2999237	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2999238	1.00[ASN][1000 genomes]
rs2999239	1.00[ASN][1000 genomes]
rs2999240	1.00[ASN][1000 genomes]
rs2999241	1.00[ASN][1000 genomes]
rs2999242	1.00[ASN][1000 genomes]
rs3006364	1.00[ASN][1000 genomes]
rs3006365	1.00[ASN][1000 genomes]
rs3006378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3006381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3006389	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7068859	1.00[CHB][hapmap]
rs7069748	1.00[CHB][hapmap]
rs7075288	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079327	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084457	1.00[ASN][1000 genomes]
rs7084621	1.00[CHB][hapmap]
rs72787457	1.00[ASN][1000 genomes]
rs72787487	1.00[ASN][1000 genomes]
rs7478426	1.00[CHB][hapmap]
rs7908842	1.00[ASN][1000 genomes]
rs7922477	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3006382	ZNF239	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44043200-44051600	Weak transcription	Brain Anterior Caudate	brain
2	chr10:44044400-44050800	Weak transcription	Fetal Lung	lung
3	chr10:44046800-44049800	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:44047400-44051200	Weak transcription	HSMM	muscle
5	chr10:44047600-44050200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:44048200-44048600	Weak transcription	Ovary	ovary
7	chr10:44048400-44048600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:44048400-44050200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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