Variant report
| Variant | rs72787487 |
|---|---|
| Chromosome Location | chr10:44014053-44014054 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:44012452..44015448-chr10:44015913..44019917,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000236114 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1338567 | 1.00[ASN][1000 genomes] |
| rs1338568 | 1.00[ASN][1000 genomes] |
| rs1338569 | 1.00[ASN][1000 genomes] |
| rs1361227 | 1.00[ASN][1000 genomes] |
| rs1361228 | 1.00[ASN][1000 genomes] |
| rs1832466 | 1.00[ASN][1000 genomes] |
| rs1832472 | 1.00[ASN][1000 genomes] |
| rs2999237 | 1.00[ASN][1000 genomes] |
| rs2999238 | 1.00[ASN][1000 genomes] |
| rs2999239 | 1.00[ASN][1000 genomes] |
| rs2999240 | 1.00[ASN][1000 genomes] |
| rs2999241 | 1.00[ASN][1000 genomes] |
| rs2999242 | 1.00[ASN][1000 genomes] |
| rs3006364 | 1.00[ASN][1000 genomes] |
| rs3006365 | 1.00[ASN][1000 genomes] |
| rs3006378 | 1.00[ASN][1000 genomes] |
| rs3006381 | 1.00[ASN][1000 genomes] |
| rs3006382 | 1.00[ASN][1000 genomes] |
| rs3006389 | 1.00[ASN][1000 genomes] |
| rs7075288 | 1.00[ASN][1000 genomes] |
| rs7079327 | 1.00[ASN][1000 genomes] |
| rs7084457 | 1.00[ASN][1000 genomes] |
| rs72787457 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7908842 | 1.00[ASN][1000 genomes] |
| rs7922477 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051325 | chr10:43988273-44022473 | ZNF genes & repeats Weak transcription Enhancers | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv275081 | chr10:43996713-44018932 | Weak transcription ZNF genes & repeats Enhancers | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:44012800-44021800 | ZNF genes & repeats | Liver | Liver |
| 2 | chr10:44013000-44022600 | ZNF genes & repeats | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
