Variant report

Variant	rs2395618
Chromosome Location	chr6:35299507-35299508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35293412..35294915-chr6:35298854..35300425,2	K562	blood:
2	chr6:35298845..35301666-chr6:35464357..35466762,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007866	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10484578	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv602907	chr6:35285720-35312267	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2395618	UHRF1BP1	cis	Whole Blood	GTEx

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35286600-35310000	Weak transcription	Right Atrium	heart
2	chr6:35286800-35299800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:35286800-35299800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:35289600-35299800	Weak transcription	Esophagus	oesophagus
5	chr6:35290200-35299800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:35291200-35299800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:35291400-35300000	Weak transcription	Spleen	Spleen
8	chr6:35291600-35309600	Weak transcription	Dnd41	blood
9	chr6:35293200-35300000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:35293200-35309600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:35293400-35299800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:35295400-35299800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:35295600-35299800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:35295600-35299800	Weak transcription	Placenta	Placenta
15	chr6:35295800-35299600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:35295800-35299800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr6:35295800-35299800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:35296000-35299800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:35296000-35299800	Weak transcription	Primary T cells from cord blood	blood
20	chr6:35296000-35299800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:35296000-35299800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:35296000-35300800	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:35296000-35303000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:35296200-35299600	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr6:35296200-35299800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:35296200-35299800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr6:35296200-35299800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr6:35296200-35299800	Weak transcription	Fetal Thymus	thymus
29	chr6:35296200-35300000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:35296400-35299600	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr6:35296400-35299800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr6:35296400-35299800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:35298600-35299800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:35298800-35299800	Weak transcription	Hela-S3	cervix
35	chr6:35298800-35299800	Weak transcription	HepG2	liver
36	chr6:35299400-35299800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links