Variant report

Variant	rs10484578
Chromosome Location	chr6:35246319-35246320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35231872..35233836-chr6:35244161..35246644,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10807147	0.83[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap]
rs1408256	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1535814	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1886243	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2395618	0.82[ASN][1000 genomes]
rs3800402	0.89[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4711406	0.87[CHB][hapmap]
rs6923951	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10484578	RP3-340B19.2	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35228400-35247800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:35228400-35248000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:35228400-35250200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:35228600-35248400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:35228600-35248800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:35228600-35253200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:35228800-35248800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:35228800-35248800	Weak transcription	Spleen	Spleen
9	chr6:35228800-35249000	Weak transcription	Fetal Intestine Large	intestine
10	chr6:35228800-35249000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:35228800-35251400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:35229000-35248800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:35229000-35248800	Weak transcription	Thymus	Thymus
14	chr6:35229000-35249000	Weak transcription	Liver	Liver
15	chr6:35229000-35250400	Weak transcription	Fetal Brain Male	brain
16	chr6:35229200-35248800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:35229200-35248800	Weak transcription	Dnd41	blood
18	chr6:35229200-35250200	Weak transcription	Pancreas	Pancrea
19	chr6:35231200-35248400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr6:35232200-35248600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:35232200-35248800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr6:35232400-35248800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr6:35232400-35250200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:35232600-35248400	Weak transcription	Fetal Lung	lung
25	chr6:35232600-35265200	Weak transcription	Stomach Mucosa	stomach
26	chr6:35232800-35248800	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr6:35232800-35248800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:35232800-35249000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr6:35233600-35248800	Weak transcription	Primary B cells from cord blood	blood
30	chr6:35233800-35258400	Weak transcription	Small Intestine	intestine
31	chr6:35235600-35246400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:35235600-35246400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:35236200-35248800	Weak transcription	Primary B cells from peripheral blood	blood
34	chr6:35236200-35248800	Weak transcription	GM12878-XiMat	blood
35	chr6:35236400-35249000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:35237600-35248600	Weak transcription	Fetal Thymus	thymus
37	chr6:35237800-35253400	Weak transcription	Gastric	stomach
38	chr6:35237800-35264800	Weak transcription	K562	blood
39	chr6:35239000-35248800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr6:35240400-35248800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:35240600-35248600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr6:35242400-35248800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr6:35242400-35248800	Weak transcription	Fetal Intestine Small	intestine
44	chr6:35242600-35248800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:35243200-35248400	Weak transcription	NHDF-Ad	bronchial
46	chr6:35243200-35250000	Weak transcription	HSMMtube	muscle
47	chr6:35243200-35250200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:35243400-35248400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:35243400-35248400	Weak transcription	Lung	lung
50	chr6:35243400-35248400	Weak transcription	Right Atrium	heart

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