Variant report

Variant	rs3800402
Chromosome Location	chr6:35146945-35146946
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35127079..35138793-chr6:35145525..35157743,32	MCF-7	breast:
2	chr6:35143164..35145592-chr6:35146745..35149067,2	K562	blood:
3	chr6:35114280..35114831-chr6:35146899..35147456,2	MCF-7	breast:
4	chr6:35146778..35148996-chr6:35180820..35183087,2	MCF-7	breast:
5	chr6:35146928..35151829-chr6:35162484..35168348,5	K562	blood:
6	chr6:35146861..35148927-chr6:35151720..35154561,2	K562	blood:
7	chr6:35143164..35145749-chr6:35145997..35149678,4	K562	blood:

Variant related genes	Relation type
ENSG00000146197	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10484578	0.89[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10807147	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10807148	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10947538	0.85[ASN][1000 genomes]
rs12191117	0.85[ASN][1000 genomes]
rs12191184	0.83[ASN][1000 genomes]
rs12191808	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12192566	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12527639	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12663320	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1408256	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1535814	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17539666	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1886242	0.88[CEU][hapmap]
rs1886243	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2181795	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4711406	0.84[CEU][hapmap];0.87[CHB][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62404566	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62404583	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6457805	0.88[CEU][hapmap]
rs6915627	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6923951	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9296143	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9368849	0.88[CEU][hapmap]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35135000-35148800	Weak transcription	Esophagus	oesophagus
2	chr6:35137000-35148800	Weak transcription	Right Atrium	heart
3	chr6:35141800-35149200	Weak transcription	HUVEC	blood vessel
4	chr6:35142000-35149000	Weak transcription	A549	lung
5	chr6:35142000-35149200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:35142000-35149600	Weak transcription	Spleen	Spleen
7	chr6:35143800-35149200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:35143800-35149400	Enhancers	Osteobl	bone
9	chr6:35144000-35149400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:35144000-35150200	Enhancers	NHDF-Ad	bronchial
11	chr6:35144200-35149400	Weak transcription	Right Ventricle	heart
12	chr6:35144800-35149000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:35145000-35147800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:35145000-35149200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:35145000-35149400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:35145000-35149400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:35145000-35150200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr6:35145200-35148200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:35145400-35148400	Enhancers	Fetal Lung	lung
20	chr6:35145400-35148600	Weak transcription	K562	blood
21	chr6:35145600-35147800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:35145800-35148600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:35145800-35149000	Weak transcription	HSMM	muscle
24	chr6:35146000-35149000	Weak transcription	HSMMtube	muscle
25	chr6:35146000-35150000	Enhancers	NHLF	lung
26	chr6:35146400-35147000	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr6:35146400-35148000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:35146400-35148000	Enhancers	GM12878-XiMat	blood
29	chr6:35146600-35147400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:35146600-35148200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:35146600-35149200	Enhancers	Fetal Muscle Leg	muscle
32	chr6:35146800-35147000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr6:35146800-35147400	Enhancers	Left Ventricle	heart
34	chr6:35146800-35147600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:35146800-35147600	Enhancers	Aorta	Aorta
36	chr6:35146800-35147600	Enhancers	Fetal Muscle Trunk	muscle
37	chr6:35146800-35147800	Weak transcription	Fetal Kidney	kidney
38	chr6:35146800-35147800	Enhancers	Placenta	Placenta
39	chr6:35146800-35148200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:35146800-35148800	Weak transcription	NH-A	brain
41	chr6:35146800-35149800	Enhancers	Fetal Stomach	stomach
42	chr6:35146800-35154400	Enhancers	Fetal Heart	heart

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