Variant report

Variant	rs9296143
Chromosome Location	chr6:35115292-35115293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10456078	0.89[EUR][1000 genomes]
rs10484578	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs10807147	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10807148	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10947538	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12191117	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12191184	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12191808	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12192566	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12527639	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12663320	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1408256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1535814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17539666	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1886242	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs1886243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2038740	0.80[CEU][hapmap]
rs2181795	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3800402	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4711406	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62404566	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62404583	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6457805	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs6915627	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6923951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9348968	0.90[EUR][1000 genomes]
rs9357195	0.90[EUR][1000 genomes]
rs9368849	0.92[CEU][hapmap];0.89[EUR][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35110200-35117000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:35110600-35116000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:35110600-35116000	Weak transcription	HSMMtube	muscle
4	chr6:35110800-35116000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:35111000-35115800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:35111200-35115800	Weak transcription	HSMM	muscle
7	chr6:35111400-35116000	Weak transcription	A549	lung
8	chr6:35113200-35118600	Enhancers	Fetal Heart	heart
9	chr6:35113400-35115400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:35113400-35116800	Enhancers	Fetal Stomach	stomach
11	chr6:35113600-35115400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:35113800-35115400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:35113800-35115800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:35113800-35116000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:35113800-35116000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:35113800-35116000	Enhancers	NHDF-Ad	bronchial
17	chr6:35113800-35117400	Enhancers	Osteobl	bone
18	chr6:35113800-35117600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:35113800-35117600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:35114000-35115600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:35114000-35115800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
22	chr6:35114000-35116400	Enhancers	Fetal Kidney	kidney
23	chr6:35114000-35117000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:35114000-35118000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:35114200-35115400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
26	chr6:35114200-35115400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
27	chr6:35114200-35115400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
28	chr6:35114200-35115600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
29	chr6:35114200-35116200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:35114400-35115800	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:35114400-35116200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:35114400-35116400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr6:35114400-35117400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:35114600-35115800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:35114600-35115800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:35114600-35116000	Enhancers	NH-A	brain
37	chr6:35114600-35116400	Enhancers	Rectal Smooth Muscle	rectum
38	chr6:35114600-35116600	Enhancers	Fetal Lung	lung
39	chr6:35114800-35115400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
40	chr6:35114800-35115800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:35114800-35116600	Enhancers	H9 Cell Line	embryonic stem cell
42	chr6:35114800-35119800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr6:35114800-35120000	Weak transcription	Brain Substantia Nigra	brain
44	chr6:35115000-35116000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:35115000-35116000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr6:35115200-35115600	Weak transcription	NHLF	lung
47	chr6:35115200-35116000	Enhancers	Fetal Intestine Small	intestine
48	chr6:35115200-35116200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:35115200-35116800	Enhancers	Aorta	Aorta
50	chr6:35115200-35117000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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