Variant report

Variant	rs2181795
Chromosome Location	chr6:35139480-35139481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35133125..35135139-chr6:35138368..35141199,2	K562	blood:
2	chr6:35139023..35142448-chr6:35162991..35165848,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10456078	0.85[EUR][1000 genomes]
rs10807147	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10807148	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947538	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12191117	0.86[ASN][1000 genomes]
rs12191184	0.85[ASN][1000 genomes]
rs12191808	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12192566	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12527639	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12663320	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1408256	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1535814	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17539666	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1886242	0.85[EUR][1000 genomes]
rs1886243	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3800402	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4711406	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62404566	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62404583	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457805	0.85[EUR][1000 genomes]
rs6915627	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6923951	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9296143	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9348968	0.84[EUR][1000 genomes]
rs9357195	0.84[EUR][1000 genomes]
rs9368849	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3340708	chr6:35135274-35139572	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35130600-35141400	Weak transcription	Brain Substantia Nigra	brain
2	chr6:35134400-35140400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:35135000-35148800	Weak transcription	Esophagus	oesophagus
4	chr6:35136600-35139600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:35137000-35141600	Weak transcription	Fetal Heart	heart
6	chr6:35137000-35141600	Weak transcription	Left Ventricle	heart
7	chr6:35137000-35148800	Weak transcription	Right Atrium	heart
8	chr6:35137200-35139600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:35137400-35139600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:35137400-35139600	Enhancers	NHDF-Ad	bronchial
11	chr6:35137400-35139800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:35137400-35142200	Enhancers	Osteobl	bone
13	chr6:35137600-35140800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:35137600-35141200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:35137600-35141600	Weak transcription	Brain Angular Gyrus	brain
16	chr6:35137600-35145200	Weak transcription	Fetal Kidney	kidney
17	chr6:35137800-35141000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:35138000-35139600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:35138000-35142400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:35139000-35140200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:35139000-35141200	Weak transcription	HSMM	muscle
22	chr6:35139000-35142000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:35139000-35146000	Weak transcription	NHLF	lung
24	chr6:35139200-35140600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:35139200-35141200	Weak transcription	NH-A	brain
26	chr6:35139200-35141400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:35139400-35139600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr6:35139400-35140400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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